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Modelling the neural code in large populations of correlated neurons

Sacha Sokoloski, Amir Aschner, Ruben Coen-Cagli
doi: https://doi.org/10.1101/2020.11.05.369827
Sacha Sokoloski
1Department of Systems and Computational Biology; Albert Einstein College of Medicine, The Bronx, New York, USA
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  • For correspondence: sacha.sokoloski@mailbox.org
Amir Aschner
2Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, The Bronx, New York, USA
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Ruben Coen-Cagli
1Department of Systems and Computational Biology; Albert Einstein College of Medicine, The Bronx, New York, USA
2Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, The Bronx, New York, USA
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Abstract

Neurons respond selectively to stimuli, and thereby define a code that associates stimuli with population response patterns. Certain correlations within population responses (noise correlations) significantly impact the information content of the code, especially in large populations. Understanding the neural code thus necessitates response models that quantify the coding properties of modelled populations, while fitting large-scale neural recordings and capturing noise correlations. In this paper we propose a class of response model based on mixture models and exponential families. We show how to fit our models with expectation-maximization, and that they capture diverse variability and covariability in recordings of macaque primary visual cortex. We also show how they facilitate accurate Bayesian decoding, provide a closed-form expression for the Fisher information, and are compatible with theories of probabilistic population coding. Our framework could allow researchers to quantitatively validate the predictions of neural coding theories against both large-scale neural recordings and cognitive performance.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://gitlab.com/sacha-sokoloski/neural-mixtures

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 21, 2021.
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Modelling the neural code in large populations of correlated neurons
Sacha Sokoloski, Amir Aschner, Ruben Coen-Cagli
bioRxiv 2020.11.05.369827; doi: https://doi.org/10.1101/2020.11.05.369827
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Modelling the neural code in large populations of correlated neurons
Sacha Sokoloski, Amir Aschner, Ruben Coen-Cagli
bioRxiv 2020.11.05.369827; doi: https://doi.org/10.1101/2020.11.05.369827

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