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Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection

View ORCID ProfileElayanambi Sundaramoorthy, Andrew P. Ryan, View ORCID ProfileAmit Fulzele, Marilyn Leonard, View ORCID ProfileMatthew D. Daugherty, View ORCID ProfileEric J. Bennett
doi: https://doi.org/10.1101/2020.11.12.380634
Elayanambi Sundaramoorthy
1Section of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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Andrew P. Ryan
2Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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Amit Fulzele
1Section of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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Marilyn Leonard
1Section of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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Matthew D. Daugherty
2Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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  • For correspondence: e1bennett@ucsd.edu mddaugherty@ucsd.edu
Eric J. Bennett
1Section of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA
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  • For correspondence: e1bennett@ucsd.edu mddaugherty@ucsd.edu
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Abstract

Ribosomes are highly abundant cellular machines that perform the essential task of translating the genetic code into proteins. Cellular translation activity is finely tuned and proteostasis insults, such as those incurred upon viral infection, activate stress signaling pathways that result in translation reprogramming. Viral infection selectively shuts down host mRNA while redistributing ribosomes for selective translation of viral mRNAs. The intricacies of this selective ribosome shuffle from host to viral mRNAs are poorly understood. Here, we uncover a role for the ribosome associated quality control (RQC) factor ZNF598, a sensor for collided ribosomes, as a critical factor for vaccinia virus mRNA translation. Collided ribosomes are sensed by ZNF598, which ubiquitylates 40S subunit proteins uS10 and eS10 and thereby initiates RQC-dependent nascent chain degradation and ribosome recycling. We show that vaccinia infection in human cells enhances uS10 ubiquitylation indicating an increased burden on RQC pathways during viral propagation. Consistent with an increased RQC demand, we demonstrate that vaccinia virus replication is impaired in cells which either lack ZNF598 or contain a ubiquitylation deficient version of uS10. Using SILAC-based proteomics and concurrent RNAseq analysis, we determine that host translation of vaccinia virus mRNAs is compromised in cells that lack RQC activity as compared to control cells whereas there was little evidence of differences in host or viral transcription. Additionally, vaccinia virus infection resulted in a loss of cellular RQC activity, suggesting that ribosomes engaged in viral protein production recruit ZNF598 away from its function in host translation. Thus, co-option of ZNF598 by vaccinia virus plays a critical role in translational reprogramming that is needed for optimal viral propagation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 12, 2020.
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Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection
Elayanambi Sundaramoorthy, Andrew P. Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
bioRxiv 2020.11.12.380634; doi: https://doi.org/10.1101/2020.11.12.380634
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Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection
Elayanambi Sundaramoorthy, Andrew P. Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
bioRxiv 2020.11.12.380634; doi: https://doi.org/10.1101/2020.11.12.380634

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