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T cells exhibit unexpectedly low discriminatory power and can respond to ultra-low affinity peptide-MHC ligands

View ORCID ProfileJohannes Pettmann, View ORCID ProfileEnas Abu-Shah, Mikhail Kutuzov, Daniel B. Wilson, View ORCID ProfileMichael L. Dustin, Simon J. Davis, P. Anton van der Merwe, View ORCID ProfileOmer Dushek
doi: https://doi.org/10.1101/2020.11.14.382630
Johannes Pettmann
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
2Radcliffe Department of Medicine, Medical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, United Kingdom
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  • ORCID record for Johannes Pettmann
Enas Abu-Shah
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
3Kennedy Institute of Rheumatology, University of Oxford, United Kingdom
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Mikhail Kutuzov
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
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Daniel B. Wilson
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
4Boston University, Department of Mathematics and Statistics, Boston, MA 02215
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Michael L. Dustin
3Kennedy Institute of Rheumatology, University of Oxford, United Kingdom
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Simon J. Davis
2Radcliffe Department of Medicine, Medical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, United Kingdom
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P. Anton van der Merwe
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
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Omer Dushek
1Sir William Dunn School of Pathology, University of Oxford, United Kingdom
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  • For correspondence: omer.dushek@path.ox.ac.uk
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Abstract

T cells use their T cell receptors (TCRs) to discriminate between peptide MHC (pMHC) ligands that bind with different affinities but precisely how different remains controversial. This is partly because the affinities of physiologically relevant interactions are often too weak to measure. Here, we introduce a surface plasmon resonance protocol to measure ultra-low TCR/pMHC affinities (KD ~ 1000 μM). Using naïve, memory, and blasted human CD8+ T cells we find that their discrimination power is unexpectedly low, in that they require a large >100-fold decrease in affinity to abolish responses. Interestingly, the discrimination power reduces further when antigen is presented in isolation on artificial surfaces but can be partially restored by adding ligands to CD2 or LFA-1. We were able to fit the kinetic proof-reading model to our data, yielding the first estimates for both the time delay (2.8 s) and number of biochemical steps (2.67). The fractional number of steps suggest that one of the proof-reading steps is not easily reversible.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 15, 2020.
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T cells exhibit unexpectedly low discriminatory power and can respond to ultra-low affinity peptide-MHC ligands
Johannes Pettmann, Enas Abu-Shah, Mikhail Kutuzov, Daniel B. Wilson, Michael L. Dustin, Simon J. Davis, P. Anton van der Merwe, Omer Dushek
bioRxiv 2020.11.14.382630; doi: https://doi.org/10.1101/2020.11.14.382630
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T cells exhibit unexpectedly low discriminatory power and can respond to ultra-low affinity peptide-MHC ligands
Johannes Pettmann, Enas Abu-Shah, Mikhail Kutuzov, Daniel B. Wilson, Michael L. Dustin, Simon J. Davis, P. Anton van der Merwe, Omer Dushek
bioRxiv 2020.11.14.382630; doi: https://doi.org/10.1101/2020.11.14.382630

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