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Genomic landscapes of canine splenic angiosarcoma (hemangiosarcoma) contain extensive heterogeneity within and between patients

Shukmei Wong, EJ Ehrhart, Samuel Stewart, Victoria Zismann, Jacob Cawley, Rebecca Halperin, Natalia Briones, Keith Richter, Karthigayini Sivaprakasam, Nieves Perdigones, Tania Contente-Cuomo, Salvatore Facista, Jeffrey M. Trent, View ORCID ProfileMuhammed Murtaza, Chand Khanna, View ORCID ProfileWilliam P. D. Hendricks
doi: https://doi.org/10.1101/2020.11.15.380048
Shukmei Wong
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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EJ Ehrhart
2Ethos Discovery, San Diego, CA, and Ethos Veterinary Health, Woburn, MA
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Samuel Stewart
2Ethos Discovery, San Diego, CA, and Ethos Veterinary Health, Woburn, MA
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Victoria Zismann
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Jacob Cawley
2Ethos Discovery, San Diego, CA, and Ethos Veterinary Health, Woburn, MA
3Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA
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Rebecca Halperin
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Natalia Briones
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Keith Richter
2Ethos Discovery, San Diego, CA, and Ethos Veterinary Health, Woburn, MA
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Karthigayini Sivaprakasam
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Nieves Perdigones
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Tania Contente-Cuomo
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Salvatore Facista
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Jeffrey M. Trent
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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Muhammed Murtaza
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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  • ORCID record for Muhammed Murtaza
Chand Khanna
2Ethos Discovery, San Diego, CA, and Ethos Veterinary Health, Woburn, MA
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William P. D. Hendricks
1Translational Genomics Research Institute, Phoenix, Arizona, United States
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  • ORCID record for William P. D. Hendricks
  • For correspondence: whendricks@tgen.org
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ABSTRACT

Cancer genomic heterogeneity presents significant challenges for understanding oncogenic processes and for cancer’s clinical management. Variation in driver mutation frequency between patients with the same tumor type as well as within individual patients’ cancers can limit the power of mutations to serve as diagnostic, prognostic, and predictive biomarkers. We have characterized genomic heterogeneity between and within patients in canine splenic hemangiosarcoma (HSA), a common naturally occurring cancer in pet dogs that is similar to human angiosarcoma (AS). HSA is a clinically, physiologically, and genomically complex canine cancer that may serve as a valuable model for understanding the origin and clinical impact of cancer heterogeneity. We conducted a prospective collection of 52 splenic masses from 44 dogs (28 HSA, 15 benign masses, and 1 stromal sarcoma) presenting to emergency care with hemoperitoneum secondary to a ruptured splenic mass. Multi-platform genomic analysis included matched tumor/normal cancer gene panel and exome sequencing. We found candidate somatic cancer driver mutations in 14/28 (50%) HSAs. Among recurrent candidate driver mutations, TP53 was most commonly mutated (29%) followed by PIK3CA (14%), AKT1 (11%), and CDKN2AIP (11%). We also identified significant intratumoral genomic heterogeneity, consistent with a branched evolution model, through multi-region exome sequencing of three distinct tumor regions from selected primary splenic tumors. These data provide new perspective on the genomic landscape and comparative value of understanding HSA in pet dogs, particularly as a naturally occurring cancer bearing intratumoral heterogeneity.

Competing Interest Statement

WPDH is the Founder and Chief Scientific Officer of Vidium Animal Health.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted November 17, 2020.
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Genomic landscapes of canine splenic angiosarcoma (hemangiosarcoma) contain extensive heterogeneity within and between patients
Shukmei Wong, EJ Ehrhart, Samuel Stewart, Victoria Zismann, Jacob Cawley, Rebecca Halperin, Natalia Briones, Keith Richter, Karthigayini Sivaprakasam, Nieves Perdigones, Tania Contente-Cuomo, Salvatore Facista, Jeffrey M. Trent, Muhammed Murtaza, Chand Khanna, William P. D. Hendricks
bioRxiv 2020.11.15.380048; doi: https://doi.org/10.1101/2020.11.15.380048
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Genomic landscapes of canine splenic angiosarcoma (hemangiosarcoma) contain extensive heterogeneity within and between patients
Shukmei Wong, EJ Ehrhart, Samuel Stewart, Victoria Zismann, Jacob Cawley, Rebecca Halperin, Natalia Briones, Keith Richter, Karthigayini Sivaprakasam, Nieves Perdigones, Tania Contente-Cuomo, Salvatore Facista, Jeffrey M. Trent, Muhammed Murtaza, Chand Khanna, William P. D. Hendricks
bioRxiv 2020.11.15.380048; doi: https://doi.org/10.1101/2020.11.15.380048

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