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A LAMP-based microfluidic chip for rapid detection of pathogen in Cryptococcal meningitis

Yueru Tian, Tong Zhang, Jian Guo, Huijun Lu, Yuhan Yao, Xi Chen, Xinlian Zhang, Guodong Sui, View ORCID ProfileMing Guan
doi: https://doi.org/10.1101/2020.11.16.386045
Yueru Tian
1Department of Laboratory Medicine, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai, China Email:
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  • For correspondence: vicky8025@126.com
Tong Zhang
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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  • For correspondence: shmzhyzt@163.com 19110740007@fudan.edu.cn 16110740002@fudan.edu.cn
Jian Guo
3Department of Laboratory Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai, China Email:
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  • For correspondence: guojian1110@126.com
Huijun Lu
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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Yuhan Yao
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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Xi Chen
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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Xinlian Zhang
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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Guodong Sui
2Department of Environmental Science & Engineering, Fudan University, Shanghai, China. Department of Medical Microbiology & Parasitology, Institute of Biomedical Science, Basic Medical College of Fudan University, Shanghai, China Email:, ,
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Ming Guan
1Department of Laboratory Medicine, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai, China Email:
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  • ORCID record for Ming Guan
  • For correspondence: gsui@fudan.edu.cn guanming88@126.com vicky8025@126.com
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Abstract

Cryptococcal meningitis (CM) is a global threat with significant attributable morbidity and mortality. Information on integrated detection for CM diagnosis is still limited. This is mainly due to the presence of a large polysaccharide capsule and the tough cell wall of Cryptococcus, which makes it difficult to extract nucleic acids on the chip. In this study, we developed a LAMP-based microfluidic chip for rapid detection of pathogen in CM. We adopted 4 duplicate filtration membrane structures to improve target capture and simplify the enrichment process, and combined lyticase digestion and thermal alkaline lysisto optimize the nucleic acid extraction of Cryptococcus on the chip, and selected a portable UVA flashlight to shine the LAMP products to obtain the visual detection results which could be observed by the naked eye. This microfluidic chip, integrating sample Cryptococcus enrichment, nucleic acid extraction and LAMP detection unit, streamlined the operation process and reduced the exposure risk of directly handling cryptococcal samples. It did not require any additional instruments and demonstrated a rapid, reliable, as well as high-efficiency approach. It truly realized the “sample-to-answer” application and could be easily used for clinical cryptococcal prediagnosis.

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Posted November 17, 2020.
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A LAMP-based microfluidic chip for rapid detection of pathogen in Cryptococcal meningitis
Yueru Tian, Tong Zhang, Jian Guo, Huijun Lu, Yuhan Yao, Xi Chen, Xinlian Zhang, Guodong Sui, Ming Guan
bioRxiv 2020.11.16.386045; doi: https://doi.org/10.1101/2020.11.16.386045
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A LAMP-based microfluidic chip for rapid detection of pathogen in Cryptococcal meningitis
Yueru Tian, Tong Zhang, Jian Guo, Huijun Lu, Yuhan Yao, Xi Chen, Xinlian Zhang, Guodong Sui, Ming Guan
bioRxiv 2020.11.16.386045; doi: https://doi.org/10.1101/2020.11.16.386045

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