ABSTRACT
The environmental context of the nitrogen-fixing mutualism between leguminous plants and rhizobial bacteria varies over space and time. Variation in resource availability, population density, and composition likely affect the ecology and evolution of rhizobia and their symbiotic interactions with hosts. We examined how host genotype, nitrogen addition, rhizobial density, and community complexity affected selection on 68 rhizobia strains in the Ensifer meliloti - Medicago truncatula mutualism. As expected, the host genotype had the most substantial effect on the size, number, and strain composition of root nodules (the symbiotic organ). The understudied environmental variable of rhizobial density had a more significant effect on strain frequency in nodules than the addition of low nitrogen levels. Higher inoculum density resulted in a nodule community that was less diverse and more beneficial but only in the context of the more selective host genotype. Higher density resulted in more diverse and less beneficial nodule communities with the less selective host. Density effects on strain composition deserve additional scrutiny as they can create eco-evolutionary feedback. Lastly, we found that relative strain rankings were stable across increasing community complexity (community complexity (2, 3, 8, or 68 strains). This unexpected result suggests that higher-order interactions between strains are rare in the context of host nodule formation and development. Taken together, our empirical work highlights the importance of developing new theoretical predictions that incorporate density dependence. Further, it has translational relevance for overcoming establishment barriers in bio-inoculants and motivating host breeding programs that maintain beneficial plant-microbe interactions across diverse agro-ecological contexts.
IMPORTANCE Legume cash, forage, and cover crops establish beneficial associations with rhizobial bacteria who perform biological nitrogen fixation (BNF)—providing Nitrogen (N) fertilizer to plants without the economic and greenhouse gas emission costs of chemical N inputs. Here, for the first time, we examine the relative influence of three environmental factors that vary in agricultural fields on strain relative fitness in nodules when scores rhizobial strains compete. In addition to manipulating Nitrogen, we also use two biotic variables that have rarely been examined: the rhizobial community’s density and complexity. Taken together, our results suggest 1) breeding legume varieties that select beneficial strains despite environmental variation are possible, 2) changes in rhizobial population densities that occur routinely in agricultural fields could drive evolutionary changes in rhizobia populations, and 3) the lack of higher-order interactions between strains will allow the high-throughput assessments of rhizobia winners and losers during plant interactions.
Competing Interest Statement
The authors have declared no competing interest.
Footnotes
Data Accessibility: The data supporting the results of this publication and the code necessary for these analyses will be made available via a GitHub repository after review and the raw reads have been deposited in NCBI BioProject: PRJNA401437.
Authorship: LTB designed the experiments, collected and analyzed data, and wrote the manuscript, BE designed the experiments, collected and analyzed data, MH and DT collected data, and PT designed the experiments, collected data, and wrote the manuscript.
