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Fine-scale population structure reveals high genetic heterogeneity of the Kuwaiti population in the Arabian Peninsula

View ORCID ProfileMuthukrishnan Eaaswarkhanth, Ajai K Pathak, Linda Ongaro, Francesco Montinaro, Prashantha Hebbar, Osama Alsmadi, Mait Metspalu, View ORCID ProfileFahd Al-Mulla, Thangavel Alphonse Thanaraj
doi: https://doi.org/10.1101/2020.11.23.393892
Muthukrishnan Eaaswarkhanth
1Department of Genetics and Bioinformatics, Dasman Diabetes Institute, P.O. Box 1180, Dasman 15462, Kuwait
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  • ORCID record for Muthukrishnan Eaaswarkhanth
Ajai K Pathak
2Estonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, Tartu 51010, Estonia
3Department of Evolutionary Biology, Institute of Molecular and Cell Biology, Riia 23b, Tartu 51010, Estonia
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Linda Ongaro
2Estonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, Tartu 51010, Estonia
3Department of Evolutionary Biology, Institute of Molecular and Cell Biology, Riia 23b, Tartu 51010, Estonia
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Francesco Montinaro
2Estonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, Tartu 51010, Estonia
4Department of Biology-Genetics, University of Bari, Bari, Italy
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Prashantha Hebbar
1Department of Genetics and Bioinformatics, Dasman Diabetes Institute, P.O. Box 1180, Dasman 15462, Kuwait
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Osama Alsmadi
1Department of Genetics and Bioinformatics, Dasman Diabetes Institute, P.O. Box 1180, Dasman 15462, Kuwait
5OA is currently affiliated with King Hussein Cancer Center, Amman, Jordan
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Mait Metspalu
2Estonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, Tartu 51010, Estonia
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Fahd Al-Mulla
1Department of Genetics and Bioinformatics, Dasman Diabetes Institute, P.O. Box 1180, Dasman 15462, Kuwait
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  • For correspondence: alphonse.thangavel@dasmaninstitute.org fahd.almulla@dasmaninstitute.org
Thangavel Alphonse Thanaraj
1Department of Genetics and Bioinformatics, Dasman Diabetes Institute, P.O. Box 1180, Dasman 15462, Kuwait
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  • For correspondence: alphonse.thangavel@dasmaninstitute.org fahd.almulla@dasmaninstitute.org
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Abstract

Recent studies have showed the diverse genetic architecture of the highly consanguineous populations inhabiting the Arabian Peninsula. Consanguinity coupled with heterogeneity is complex and makes it difficult to understand the bases of population-specific genetic diseases in the region. Therefore, comprehensive genetic characterization of the populations at the finest scale is warranted. Here, we revisit the genetic structure of the Kuwait population by analyzing genome-wide single nucleotide polymorphisms data from 583 Kuwaiti individuals sorted into three subgroups. We envisage a diverse demographic genetic history among the three subgroups based on drift and allelic sharing with modern and ancient individuals. Furthermore, our comprehensive haplotype-based analyses disclose a high genetic heterogeneity among the Kuwaiti populations. We infer the major sources of ancestry within the newly defined groups; one with an obvious predominance of sub-Saharan/Western Africa mostly comprising Kuwait-B individuals, and other with West Eurasia including Kuwait-P and Kuwait-S individuals. Overall, our results recapitulate the historical population movements and reaffirm the genetic imprints of the legacy of continental trading in the region. Such deciphering of fine-scale population structure and their regional genetic heterogeneity would provide clues to the uncharted areas of disease-gene discovery and related associations in populations inhabiting the Arabian Peninsula.

Competing Interest Statement

The authors have declared no competing interest.

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Posted November 23, 2020.
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Fine-scale population structure reveals high genetic heterogeneity of the Kuwaiti population in the Arabian Peninsula
Muthukrishnan Eaaswarkhanth, Ajai K Pathak, Linda Ongaro, Francesco Montinaro, Prashantha Hebbar, Osama Alsmadi, Mait Metspalu, Fahd Al-Mulla, Thangavel Alphonse Thanaraj
bioRxiv 2020.11.23.393892; doi: https://doi.org/10.1101/2020.11.23.393892
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Fine-scale population structure reveals high genetic heterogeneity of the Kuwaiti population in the Arabian Peninsula
Muthukrishnan Eaaswarkhanth, Ajai K Pathak, Linda Ongaro, Francesco Montinaro, Prashantha Hebbar, Osama Alsmadi, Mait Metspalu, Fahd Al-Mulla, Thangavel Alphonse Thanaraj
bioRxiv 2020.11.23.393892; doi: https://doi.org/10.1101/2020.11.23.393892

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