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Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Slawomir Kubik, Ana Claudia Marques, Xiaobin Xing, Janine Silvery, Claire Bertelli, Flavio De Maio, Spyros Pournaras, Tom Burr, Yannis Duffourd, Helena Siemens, Chakib Alloui, Lin Song, Yvan Wenger, Alexandra Saitta, Morgane Macheret, Ewan W. Smith, Philippe Menu, Marion Brayer, Lars M. Steinmetz, Ali Si-Mohammed, Josiane Chuisseu, Richard Stevens, Pantelis Constantoulakis, Michela Sali, Gilbert Greub, Carsten Tiemann, Vicent Pelechano, Adrian Willig, Zhenyu Xu
doi: https://doi.org/10.1101/2020.12.01.405738
Slawomir Kubik
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Ana Claudia Marques
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Xiaobin Xing
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Janine Silvery
3LABCON-OWL GmbH, Siemensstraße 40, D-32105 Bad Salzuflen, USt-IdNr. DE814960283, Germany
Claire Bertelli
4Genomics and Metagenomics Laboratory, Institute of Microbiology, Lausanne University Hospital and University of Lausanne, Bugnon 48, 1011 Lausanne, Switzerland
Flavio De Maio
5Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, L.go Agostino Gemelli 8, 00168 Roma, Italy
Spyros Pournaras
6Laboratory of Clinical Microbiology, Attikon University Hospital Medical School, National and Kapodistrian University of Athens, Athens, Rimini 1, Chaidari 124 62, Greece
Tom Burr
7Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom
Yannis Duffourd
8Equipe GAD - Inserm U1231, CHU François Mitterrand; 21000 Dijon, France
Helena Siemens
3LABCON-OWL GmbH, Siemensstraße 40, D-32105 Bad Salzuflen, USt-IdNr. DE814960283, Germany
Chakib Alloui
9Laboratoire de Virologie, CHU Avicenne, AP-HP, 93000 Bobigny, France
Lin Song
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Yvan Wenger
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Alexandra Saitta
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Morgane Macheret
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Ewan W. Smith
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Philippe Menu
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Marion Brayer
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Lars M. Steinmetz
10Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA
Ali Si-Mohammed
11Laboratoire de Virologie, CHU François Mitterrand; 2, rue Angélique Ducoudray, 2100 Dijon, France
Josiane Chuisseu
7Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom
Richard Stevens
7Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom
Pantelis Constantoulakis
12BioAnalytica Genotypos SA, 3-5 Ilision str, 115 28 Athens, Greece
Michela Sali
13Dipartimento di Scienze biotecnologiche di base, cliniche intensivologiche e perioperatorie - Sezione di Microbiologia, Università Cattolica del Sacro Cuore, Rome, Italy
Gilbert Greub
4Genomics and Metagenomics Laboratory, Institute of Microbiology, Lausanne University Hospital and University of Lausanne, Bugnon 48, 1011 Lausanne, Switzerland
Carsten Tiemann
3LABCON-OWL GmbH, Siemensstraße 40, D-32105 Bad Salzuflen, USt-IdNr. DE814960283, Germany
Vicent Pelechano
14SciLifeLab, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 17165 Solna, Sweden
Adrian Willig
1SOPHiA Genetics, Chemin des Mines 9, CH-1202 Geneva, Switzerland
Zhenyu Xu
2SOPHiA Genetics, Rue du Centre 172, CH-1025 Saint Sulpice, Switzerland
Posted December 03, 2020.
Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Slawomir Kubik, Ana Claudia Marques, Xiaobin Xing, Janine Silvery, Claire Bertelli, Flavio De Maio, Spyros Pournaras, Tom Burr, Yannis Duffourd, Helena Siemens, Chakib Alloui, Lin Song, Yvan Wenger, Alexandra Saitta, Morgane Macheret, Ewan W. Smith, Philippe Menu, Marion Brayer, Lars M. Steinmetz, Ali Si-Mohammed, Josiane Chuisseu, Richard Stevens, Pantelis Constantoulakis, Michela Sali, Gilbert Greub, Carsten Tiemann, Vicent Pelechano, Adrian Willig, Zhenyu Xu
bioRxiv 2020.12.01.405738; doi: https://doi.org/10.1101/2020.12.01.405738
Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Slawomir Kubik, Ana Claudia Marques, Xiaobin Xing, Janine Silvery, Claire Bertelli, Flavio De Maio, Spyros Pournaras, Tom Burr, Yannis Duffourd, Helena Siemens, Chakib Alloui, Lin Song, Yvan Wenger, Alexandra Saitta, Morgane Macheret, Ewan W. Smith, Philippe Menu, Marion Brayer, Lars M. Steinmetz, Ali Si-Mohammed, Josiane Chuisseu, Richard Stevens, Pantelis Constantoulakis, Michela Sali, Gilbert Greub, Carsten Tiemann, Vicent Pelechano, Adrian Willig, Zhenyu Xu
bioRxiv 2020.12.01.405738; doi: https://doi.org/10.1101/2020.12.01.405738
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