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Bridging neuronal correlations and dimensionality reduction

Akash Umakantha, Rudina Morina, Benjamin R. Cowley, View ORCID ProfileAdam C. Snyder, View ORCID ProfileMatthew A. Smith, View ORCID ProfileByron M. Yu
doi: https://doi.org/10.1101/2020.12.04.383604
Akash Umakantha
1Carnegie Mellon Neuroscience Institute, Pittsburgh, PA
2Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA
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Rudina Morina
3Department of Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA
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Benjamin R. Cowley
2Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA
4Princeton Neuroscience Institute, Princeton University, Princeton, NJ
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Adam C. Snyder
3Department of Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA
5Department of Brain and Cognitive Sciences, University of Rochester, Rochester, NY
6Department of Neuroscience, University of Rochester, Rochester, NY
7Center for Visual Science, University of Rochester, Rochester, NY
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Matthew A. Smith
1Carnegie Mellon Neuroscience Institute, Pittsburgh, PA
8Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA
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Byron M. Yu
1Carnegie Mellon Neuroscience Institute, Pittsburgh, PA
3Department of Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA
8Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA
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  • For correspondence: byronyu@cmu.edu
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Abstract

Two commonly used approaches to study interactions among neurons are spike count correlation, which describes pairs of neurons, and dimensionality reduction, applied to a population of neurons. While both approaches have been used to study trial-to-trial correlated neuronal variability, they are often used in isolation and have not been directly related. We first established concrete mathematical and empirical relationships between pairwise correlation and metrics of population-wide covariability based on dimensionality reduction. Applying these insights to macaque V4 population recordings, we found that the previously reported decrease in mean pairwise correlation associated with attention stemmed from three distinct changes in population-wide covariability. Overall, our work builds the intuition and formalism to bridge between pairwise correlation and population-wide covariability and presents a cautionary tale about the inferences one can make about population activity by using a single statistic, whether it be mean pairwise correlation or dimensionality.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 04, 2020.
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Bridging neuronal correlations and dimensionality reduction
Akash Umakantha, Rudina Morina, Benjamin R. Cowley, Adam C. Snyder, Matthew A. Smith, Byron M. Yu
bioRxiv 2020.12.04.383604; doi: https://doi.org/10.1101/2020.12.04.383604
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Bridging neuronal correlations and dimensionality reduction
Akash Umakantha, Rudina Morina, Benjamin R. Cowley, Adam C. Snyder, Matthew A. Smith, Byron M. Yu
bioRxiv 2020.12.04.383604; doi: https://doi.org/10.1101/2020.12.04.383604

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