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A molecular mechanism for the generation of ligand-dependent differential outputs by the epidermal growth factor receptor

View ORCID ProfileYongjian Huang, View ORCID ProfileJana Ognjenović, View ORCID ProfileDeepti Karandur, Kate Miller, View ORCID ProfileAlan Merk, View ORCID ProfileSriram Subramaniam, View ORCID ProfileJohn Kuriyan
doi: https://doi.org/10.1101/2020.12.08.417006
Yongjian Huang
1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
2California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA
3Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Jana Ognjenović
4Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA
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Deepti Karandur
1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
2California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA
3Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Kate Miller
1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
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Alan Merk
4Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA
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Sriram Subramaniam
5University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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  • For correspondence: [email protected] [email protected]
John Kuriyan
1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
2California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA
3Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA
6Department of Chemistry, University of California, Berkeley, Berkeley, CA 94720, USA
7Divisions of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
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  • For correspondence: [email protected] [email protected]
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Abstract

The epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase that couples the binding of extracellular ligands, such as EGF and transforming growth factor-α (TGF-α), to the initiation of intracellular signaling pathways. EGFR binds to EGF and TGF-α with similar affinity but generates different signals from these ligands. To address the mechanistic basis of this phenomenon, we have carried out cryo-EM analyses of human EGFR bound to EGF and TGF-α. We show that the extracellular module adopts an ensemble of dimeric conformations when bound to either EGF or TGF-α. The two extreme states of this ensemble represent distinct ligand-bound quaternary structures in which the membrane-proximal tips of the extracellular module are either juxtaposed or separated. EGF and TGF-α differ in their ability to maintain the conformation with the membrane-proximal tips of the extracellular module separated, and this conformation is stabilized preferentially by an oncogenic EGFR mutation. Close proximity of the transmembrane helices at the junction with the extracellular module has been associated previously with increased EGFR activity. Our results show how EGFR can couple the binding of different ligands to differential modulation of this proximity, thereby suggesting a molecular mechanism for the generation of ligand-sensitive differential outputs in this receptor family.

Competing Interest Statement

J.K. is a cofounder of Nurix Therapeutics and is on the scientific advisory boards of Carmot and Revolution Medicine. S.S. is Founder and Chief Executive Officer of Gandeeva Therapeutics Inc.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted August 19, 2021.
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A molecular mechanism for the generation of ligand-dependent differential outputs by the epidermal growth factor receptor
Yongjian Huang, Jana Ognjenović, Deepti Karandur, Kate Miller, Alan Merk, Sriram Subramaniam, John Kuriyan
bioRxiv 2020.12.08.417006; doi: https://doi.org/10.1101/2020.12.08.417006
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A molecular mechanism for the generation of ligand-dependent differential outputs by the epidermal growth factor receptor
Yongjian Huang, Jana Ognjenović, Deepti Karandur, Kate Miller, Alan Merk, Sriram Subramaniam, John Kuriyan
bioRxiv 2020.12.08.417006; doi: https://doi.org/10.1101/2020.12.08.417006

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