Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas

Yotam Voskoboynik, Aidan Glina, Mark Kowarsky, Chiara Anselmi, Norma F Neff, Katherine J Ishizuka, Karla J Palmeri, Benyamin Rosental, Tal Gordon, Stephen R Quake, Irving L Weissman, Rachel Ben-Shlomo, Debashis Sahoo, Ayelet Voskoboynik
doi: https://doi.org/10.1101/2020.12.08.417055
Yotam Voskoboynik
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Aidan Glina
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mark Kowarsky
2Department of Physics, Stanford University, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chiara Anselmi
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
3Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Norma F Neff
4Chan Zuckerberg Biohub, San Francisco CA 94158, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Katherine J Ishizuka
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
3Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Karla J Palmeri
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
3Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Benyamin Rosental
5The Shraga Segal Department of Microbiology, Immunology, and Genetics, Faculty of Health Sciences, Center for Regenerative Medicine and Stem Cells, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Tal Gordon
6Zoology Department, Tel Aviv University, Tel-Aviv, 69978, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Stephen R Quake
4Chan Zuckerberg Biohub, San Francisco CA 94158, USA
7Departments of Applied Physics and Bioengineering, Stanford University, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Irving L Weissman
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
3Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
4Chan Zuckerberg Biohub, San Francisco CA 94158, USA
8Ludwig Center, Stanford University School of Medicine, Stanford, CA 94305, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: ayeletv@stanford.edu dsahoo@ucsd.edu ekly@research.haifa.ac.il
Rachel Ben-Shlomo
9Department of Biology and Environment, University of Haifa-Oranim, Tivon 36006, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: ayeletv@stanford.edu dsahoo@ucsd.edu ekly@research.haifa.ac.il
Debashis Sahoo
10Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
11Department of Computer Science and Engineering, Jacob’s School of Engineering, University of California San Diego, La Jolla, CA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: ayeletv@stanford.edu dsahoo@ucsd.edu ekly@research.haifa.ac.il
Ayelet Voskoboynik
1Stanford University, Hopkins Marine Station, Pacific Grove, CA 93950, USA
3Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
4Chan Zuckerberg Biohub, San Francisco CA 94158, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: ayeletv@stanford.edu dsahoo@ucsd.edu ekly@research.haifa.ac.il
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Expression levels of circadian clock genes, which regulate 24-hour rhythms of behavior and physiology, have been shown to change with age. However, a study holistically linking aging and circadian gene expression is missing. Using the colonial chordate Botryllus schlosseri, we combined transcriptome sequencing and stem cell-mediated aging phenomena to test how circadian gene expression changes with age. This revealed that B. schlosseri clock and clock-controlled genes oscillate organism-wide, with daily, age-specific amplitudes and frequencies. These age-related, circadian patterns persist at the tissue level, where dramatic variations in cyclic gene expression of tissue profiles link to morphological and cellular aging phenotypes. Similar cyclical expression differences were found in hundreds of pathways associated with known hallmarks of aging, as well as pathways that were not previously linked to aging. The atlas we developed points to alterations in circadian gene expression as a key regulator of aging.

One Sentence Summary The Ticking Clock: Systemic changes in circadian gene expression correlates with wide-ranging phenotypes of aging

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted December 09, 2020.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas
Yotam Voskoboynik, Aidan Glina, Mark Kowarsky, Chiara Anselmi, Norma F Neff, Katherine J Ishizuka, Karla J Palmeri, Benyamin Rosental, Tal Gordon, Stephen R Quake, Irving L Weissman, Rachel Ben-Shlomo, Debashis Sahoo, Ayelet Voskoboynik
bioRxiv 2020.12.08.417055; doi: https://doi.org/10.1101/2020.12.08.417055
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas
Yotam Voskoboynik, Aidan Glina, Mark Kowarsky, Chiara Anselmi, Norma F Neff, Katherine J Ishizuka, Karla J Palmeri, Benyamin Rosental, Tal Gordon, Stephen R Quake, Irving L Weissman, Rachel Ben-Shlomo, Debashis Sahoo, Ayelet Voskoboynik
bioRxiv 2020.12.08.417055; doi: https://doi.org/10.1101/2020.12.08.417055

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Developmental Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4119)
  • Biochemistry (8828)
  • Bioengineering (6532)
  • Bioinformatics (23486)
  • Biophysics (11806)
  • Cancer Biology (9223)
  • Cell Biology (13336)
  • Clinical Trials (138)
  • Developmental Biology (7444)
  • Ecology (11425)
  • Epidemiology (2066)
  • Evolutionary Biology (15174)
  • Genetics (10453)
  • Genomics (14056)
  • Immunology (9188)
  • Microbiology (22200)
  • Molecular Biology (8823)
  • Neuroscience (47627)
  • Paleontology (351)
  • Pathology (1431)
  • Pharmacology and Toxicology (2493)
  • Physiology (3736)
  • Plant Biology (8090)
  • Scientific Communication and Education (1438)
  • Synthetic Biology (2225)
  • Systems Biology (6042)
  • Zoology (1254)