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Molecular and functional basis of a novel Amazonian Dark Earth Esterase 1 (Ade1) with hysteresis behavior and quorum-quenching activity

Tania Churasacari Vinces, Anacleto Silva de Souza, Cecília F. Carvalho, View ORCID ProfileRaphael D. Teixeira, Beatriz Aparecida Passos Bismara, Elisabete J. Vicente, José O. Pereira, View ORCID ProfileRobson Francisco de Souza, View ORCID ProfileMauricio Yonamine, Sandro Roberto Marana, View ORCID ProfileChuck Shaker Farah, View ORCID ProfileCristiane R. Guzzo
doi: https://doi.org/10.1101/2020.12.16.421545
Tania Churasacari Vinces
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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Anacleto Silva de Souza
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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Cecília F. Carvalho
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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Raphael D. Teixeira
2Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil
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Beatriz Aparecida Passos Bismara
4Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil
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Elisabete J. Vicente
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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José O. Pereira
3Biotechnology Group, Federal University of Amazonas, Amazonas, Brazil
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Robson Francisco de Souza
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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Mauricio Yonamine
4Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil
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Sandro Roberto Marana
2Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil
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Chuck Shaker Farah
2Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil
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Cristiane R. Guzzo
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil
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  • ORCID record for Cristiane R. Guzzo
  • For correspondence: crisguzzo@usp.br crisguzzo@gmail.com
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Abstract

Amazon Dark Earth (ADE) soil is rich in organic compounds and its fertility has been associated with a high diversity of microorganisms. Herein, we investigate the biochemical and functional features of a novel esterase, Ade1, obtained from a metagenomic library of Amazonian Dark Earth soils of the Amazonian Rainforest, in Brazil. The esterases cleave ester bonds to form a carboxylic and an alcohol group. Esterases and lipases are enzymes found in almost all living organisms, demonstrating their biological relevance. We reported that Ade1 belongs to an α/β-hydrolase superfamily. We suggest that Ade1 is a moonlighting enzyme with hysteresis behavior and quorum-quenching activity, which may play a key role in the metabolism of a Gram-negative proteobacteria. In addition, molecular dynamics simulations reveal that the hysteresis behavior is directly associated with structural properties of the cap domain. Our findings reveal details of the molecular basis, catalytic and structural mechanisms of a novel α/β-hydrolase, which may be applied to other esterases of biotechnological, food, and/or pharmaceutical interest.

Figure

Competing Interest Statement

The authors have declared no competing interest.

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Posted December 16, 2020.
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Molecular and functional basis of a novel Amazonian Dark Earth Esterase 1 (Ade1) with hysteresis behavior and quorum-quenching activity
Tania Churasacari Vinces, Anacleto Silva de Souza, Cecília F. Carvalho, Raphael D. Teixeira, Beatriz Aparecida Passos Bismara, Elisabete J. Vicente, José O. Pereira, Robson Francisco de Souza, Mauricio Yonamine, Sandro Roberto Marana, Chuck Shaker Farah, Cristiane R. Guzzo
bioRxiv 2020.12.16.421545; doi: https://doi.org/10.1101/2020.12.16.421545
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Molecular and functional basis of a novel Amazonian Dark Earth Esterase 1 (Ade1) with hysteresis behavior and quorum-quenching activity
Tania Churasacari Vinces, Anacleto Silva de Souza, Cecília F. Carvalho, Raphael D. Teixeira, Beatriz Aparecida Passos Bismara, Elisabete J. Vicente, José O. Pereira, Robson Francisco de Souza, Mauricio Yonamine, Sandro Roberto Marana, Chuck Shaker Farah, Cristiane R. Guzzo
bioRxiv 2020.12.16.421545; doi: https://doi.org/10.1101/2020.12.16.421545

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