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League of Brazilian Bioinformatics: a competition framework to promote scientific training

View ORCID ProfileL. M. Carvalho, View ORCID ProfileN. A. R. Coimbra, View ORCID ProfileM. R. C. Neves, View ORCID ProfileN. J. Fonseca, M. A. Costa, View ORCID ProfileE. C. A. Horacio, R. Riyuzo, View ORCID ProfileF. F. Aburjaile, View ORCID ProfileS. T. Nagamatsu
doi: https://doi.org/10.1101/2020.12.17.423357
L. M. Carvalho
1Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, State University of Campinas, Bertrand Russel road, 13083-970, Campinas, São Paulo, Brazil
2Center for Computing in Engineering and Sciences, State University of Campinas, Josué de Castro road, 13083-861, Campinas, São Paulo, Brazil
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  • For correspondence: lucasmigueel@gmail.com
N. A. R. Coimbra
3Department of Biochemistry and Immunology, Institute of Biological Sciences, Federal University of Minas Gerais, Antonio Carlos Avenue, 31270-901, Belo Horizonte, Minas gerais, Brazil
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M. R. C. Neves
4Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, Prof. Lineu Prestes Avenue, 05508-000, São Paulo, São Paulo, Brazil
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N. J. Fonseca
3Department of Biochemistry and Immunology, Institute of Biological Sciences, Federal University of Minas Gerais, Antonio Carlos Avenue, 31270-901, Belo Horizonte, Minas gerais, Brazil
5Cellular Structure and 3D Bioimaging, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, CB10 1SA, Hinxton, Cambridgeshire, United Kingdom
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M. A. Costa
6Laboratory of Flavivirus, Institute Oswaldo Cruz, Oswaldo Cruz Foundation (IOC/FIOCRUZ), Brasil Avenue, 21040-360, Rio de Janeiro, Rio de Janeiro, Brazil
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E. C. A. Horacio
7Departament of Genetics, Ecology and Evolution, Institute of Biological Sciences, Federal University of Minas Gerais, Antonio Carlos Avenue, 31270-901, Belo Horizonte, Minas gerais, Brazil
8René Rachou Institute, Oswaldo Cruz Foundation, Augusto de Lima Avenue, 30190-009, Belo Horizonte, Minas gerais, Brazil
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R. Riyuzo
9Department of Biochemistry, Institute of Chemistry, University of São Paulo, Prof. Lineu Prestes Avenue, 05508-000, São Paulo, São Paulo, Brazil
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F. F. Aburjaile
6Laboratory of Flavivirus, Institute Oswaldo Cruz, Oswaldo Cruz Foundation (IOC/FIOCRUZ), Brasil Avenue, 21040-360, Rio de Janeiro, Rio de Janeiro, Brazil
10Department of Genetics, Federal University of Pernambuco, Prof. Moraes Rego Avenue, 50670-901, Recife, Pernambuco, Brazil
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S. T. Nagamatsu
11Department of Psychiatry, Division of Human Genetics, Yale School of Medicine. New Haven, CT, USA.
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  • For correspondence: lucasmigueel@gmail.com
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Abstract

Background the scientific training to become a bioinformatician includes multidisciplinary abilities, which increase the challenges to professional development.

Competition framework in order to improve and promote the ongoing training of the Brazilian bioinformatics community, we organize a national competition, with the main goal to develop human resources and abilities in Computational Biology at the national level. The competition framework was designed in three phases: 1) a one-day challenge composed of 60 multiple-choice questions covering Biology, Computer Science, and Bioinformatics knowledge; 2) five Computational Biology challenges to be solved in three days; and 3) development of an original project evaluated during the 15th X-meeting.

Results the first edition of the League of Brazilian Bioinformatics (LBB) counted 168 competitors and 59 groups, distributed into undergraduate students (14.4%), graduate students (12.6% master and 16.8%, Ph.D.), and other professional fields. The first phase selected 46 teams to proceed in the competition, while the second phase selected the three top-performing teams.

Conclusion during the competition, we were able to stimulate teamwork in the main areas of Bioinformatics, with the engagement of all research-level competitors. Furthermore, we identified opportunities to deliver and offer better training to the community and we intend to apply the acquired experience in the second edition of the LBB, which will occur in 2021.

Supplementary information Supplementary data are available at Bioinformatics

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted December 20, 2020.
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League of Brazilian Bioinformatics: a competition framework to promote scientific training
L. M. Carvalho, N. A. R. Coimbra, M. R. C. Neves, N. J. Fonseca, M. A. Costa, E. C. A. Horacio, R. Riyuzo, F. F. Aburjaile, S. T. Nagamatsu
bioRxiv 2020.12.17.423357; doi: https://doi.org/10.1101/2020.12.17.423357
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League of Brazilian Bioinformatics: a competition framework to promote scientific training
L. M. Carvalho, N. A. R. Coimbra, M. R. C. Neves, N. J. Fonseca, M. A. Costa, E. C. A. Horacio, R. Riyuzo, F. F. Aburjaile, S. T. Nagamatsu
bioRxiv 2020.12.17.423357; doi: https://doi.org/10.1101/2020.12.17.423357

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