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Rotavirus Replication Factories Are Complex Ribonucleoprotein Condensates

Florian Geiger, View ORCID ProfileGuido Papa, William E. Arter, Julia Acker, Kadi L. Saar, Nadia Erkamp, Runzhang Qi, Jack Bravo, Sebastian Strauss, View ORCID ProfileGeorg Krainer, Oscar R. Burrone, Ralf Jungmann, Tuomas P.J. Knowles, Hanna Engelke, View ORCID ProfileAlexander Borodavka
doi: https://doi.org/10.1101/2020.12.18.423429
Florian Geiger
1Ludwig-Maximilians-Universität München, Department of Chemistry, Butenandstr. 11, 81377, Munich, Germany.
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Guido Papa
2International Center for Genetic Engineering and Biotechnology, Padriciano, 99, 34149, Trieste, Italy.
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William E. Arter
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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Julia Acker
4University of Cambridge, Department of Biochemistry, Cambridge, CB2 1QW, U.K.
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Kadi L. Saar
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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Nadia Erkamp
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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Runzhang Qi
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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Jack Bravo
4University of Cambridge, Department of Biochemistry, Cambridge, CB2 1QW, U.K.
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Sebastian Strauss
5Max Planck Institute of Biochemistry, 82152 Martinsried near Munich and Department of Physics and Center for Nanoscience, 80539 Munich, Germany.
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Georg Krainer
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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  • ORCID record for Georg Krainer
Oscar R. Burrone
2International Center for Genetic Engineering and Biotechnology, Padriciano, 99, 34149, Trieste, Italy.
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Ralf Jungmann
5Max Planck Institute of Biochemistry, 82152 Martinsried near Munich and Department of Physics and Center for Nanoscience, 80539 Munich, Germany.
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Tuomas P.J. Knowles
3University of Cambridge, Department of Chemistry, Cambridge, CB2 1QW, U.K.
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Hanna Engelke
1Ludwig-Maximilians-Universität München, Department of Chemistry, Butenandstr. 11, 81377, Munich, Germany.
6Karl-Franzens-Universität Graz, Institute of Pharmaceutical Sciences, Humboldtstr. 46, 8010 Graz, Austria.
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Alexander Borodavka
1Ludwig-Maximilians-Universität München, Department of Chemistry, Butenandstr. 11, 81377, Munich, Germany.
4University of Cambridge, Department of Biochemistry, Cambridge, CB2 1QW, U.K.
5Max Planck Institute of Biochemistry, 82152 Martinsried near Munich and Department of Physics and Center for Nanoscience, 80539 Munich, Germany.
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  • For correspondence: ab2677@cam.ac.uk
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Abstract

RNA viruses induce formation of subcellular organelles that provide microenvironments conducive to their replication. Here we show that replication factories of rotaviruses represent protein-RNA condensates that are formed via liquid-liquid phase separation. We demonstrate that rotavirus proteins NSP5 and NSP2 undergo phase separation in vitro and form RNA-rich condensates in vivo that can be reversibly dissolved by aliphatic diols. During infection, these RNA-protein condensates became less dynamic and impervious to aliphatic diols, indicating a transition from a liquid to solid state. Some aspects of assembly of rotavirus replication factories mirror the formation of cytoplasmic ribonucleoprotein granules, while the selective enrichment of viral transcripts appears to be a unique feature of these condensates. Such complex RNA-protein condensates that underlie replication of RNA viruses represent an attractive target for developing novel therapeutic approaches.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted December 20, 2020.
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Rotavirus Replication Factories Are Complex Ribonucleoprotein Condensates
Florian Geiger, Guido Papa, William E. Arter, Julia Acker, Kadi L. Saar, Nadia Erkamp, Runzhang Qi, Jack Bravo, Sebastian Strauss, Georg Krainer, Oscar R. Burrone, Ralf Jungmann, Tuomas P.J. Knowles, Hanna Engelke, Alexander Borodavka
bioRxiv 2020.12.18.423429; doi: https://doi.org/10.1101/2020.12.18.423429
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Rotavirus Replication Factories Are Complex Ribonucleoprotein Condensates
Florian Geiger, Guido Papa, William E. Arter, Julia Acker, Kadi L. Saar, Nadia Erkamp, Runzhang Qi, Jack Bravo, Sebastian Strauss, Georg Krainer, Oscar R. Burrone, Ralf Jungmann, Tuomas P.J. Knowles, Hanna Engelke, Alexander Borodavka
bioRxiv 2020.12.18.423429; doi: https://doi.org/10.1101/2020.12.18.423429

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