Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Molecular fluctuations as a ruler of force-induced protein conformations

Andrew Stannard, Marc Mora, Amy E.M. Beedle, Marta Castro-Lopez, Stephanie Board, Sergi Garcia-Manyes
doi: https://doi.org/10.1101/2020.12.18.423481
Andrew Stannard
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Marc Mora
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Amy E.M. Beedle
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Marta Castro-Lopez
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Stephanie Board
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sergi Garcia-Manyes
King's College London
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: sergi.garcia-manyes@kcl.ac.uk
  • Abstract
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Molecular fluctuations directly reflect the underlying energy landscape. Variance analysis can probe protein dynamics in several biochemistry-driven approaches, yet measurement of probe-independent fluctuations in proteins exposed to mechanical forces remains only accessible through steered molecular dynamics simulations. Using single molecule magnetic tweezers, here we conduct variance analysis to show that individual unfolding and refolding transitions occurring in dynamic equilibrium in a single protein under force are hallmarked by a change in the protein's end-to-end fluctuations, revealing a change in protein stiffness. By unfolding and refolding three structurally distinct proteins under a wide range of constant forces, we demonstrate that the associated change in protein compliance to reach force-induced thermodynamically-stable states scales with the protein's contour length, in agreement with the sequence-independent FJC model of polymer physics. Our findings will help probe the conformational dynamics of proteins exposed to mechanical force at high resolution, of central importance in mechanosensing and mechanotransduction.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted December 19, 2020.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Molecular fluctuations as a ruler of force-induced protein conformations
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Molecular fluctuations as a ruler of force-induced protein conformations
Andrew Stannard, Marc Mora, Amy E.M. Beedle, Marta Castro-Lopez, Stephanie Board, Sergi Garcia-Manyes
bioRxiv 2020.12.18.423481; doi: https://doi.org/10.1101/2020.12.18.423481
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Molecular fluctuations as a ruler of force-induced protein conformations
Andrew Stannard, Marc Mora, Amy E.M. Beedle, Marta Castro-Lopez, Stephanie Board, Sergi Garcia-Manyes
bioRxiv 2020.12.18.423481; doi: https://doi.org/10.1101/2020.12.18.423481

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Biophysics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3686)
  • Biochemistry (7774)
  • Bioengineering (5668)
  • Bioinformatics (21245)
  • Biophysics (10563)
  • Cancer Biology (8162)
  • Cell Biology (11915)
  • Clinical Trials (138)
  • Developmental Biology (6738)
  • Ecology (10388)
  • Epidemiology (2065)
  • Evolutionary Biology (13843)
  • Genetics (9694)
  • Genomics (13056)
  • Immunology (8123)
  • Microbiology (19956)
  • Molecular Biology (7833)
  • Neuroscience (42973)
  • Paleontology (318)
  • Pathology (1276)
  • Pharmacology and Toxicology (2256)
  • Physiology (3350)
  • Plant Biology (7208)
  • Scientific Communication and Education (1309)
  • Synthetic Biology (1999)
  • Systems Biology (5528)
  • Zoology (1126)