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The position of single-base deletions in the VNTR sequence of the carboxyl ester lipase (CEL) gene determines pathogenicity

Anny Gravdal, Xunjun Xiao, Miriam Cnop, Khadija El Jellas, Pål R. Njølstad, View ORCID ProfileMark E. Lowe, Bente B. Johansson, View ORCID ProfileAnders Molven, Karianne Fjeld
doi: https://doi.org/10.1101/2020.12.23.424204
Anny Gravdal
aThe Gade Laboratory for Pathology, Department of Clinical Medicine, University of Bergen, Bergen, Norway
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
cDepartment of Medical Genetics, Haukeland University Hospital, Bergen, Norway
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Xunjun Xiao
dDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Washington University School of Medicine, St. Louis, MO, USA
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Miriam Cnop
eULB Center for Diabetes Research, Université Libre de Bruxelles, Brussels, Belgium
fDivision of Endocrinology, ULB Erasmus Hospital, Université Libre de Bruxelles, Brussels, Belgium
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Khadija El Jellas
aThe Gade Laboratory for Pathology, Department of Clinical Medicine, University of Bergen, Bergen, Norway
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
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Pål R. Njølstad
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
gDepartment of Pediatrics and Adolescent Medicine, Haukeland University Hospital, Bergen, Norway
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Mark E. Lowe
dDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Washington University School of Medicine, St. Louis, MO, USA
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Bente B. Johansson
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
gDepartment of Pediatrics and Adolescent Medicine, Haukeland University Hospital, Bergen, Norway
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Anders Molven
aThe Gade Laboratory for Pathology, Department of Clinical Medicine, University of Bergen, Bergen, Norway
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
hDepartment of Pathology, Haukeland University Hospital, Bergen, Norway
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  • For correspondence: anders.molven@uib.no
Karianne Fjeld
aThe Gade Laboratory for Pathology, Department of Clinical Medicine, University of Bergen, Bergen, Norway
bCenter for Diabetes Research, Department of Clinical Science, University of Bergen, Norway
cDepartment of Medical Genetics, Haukeland University Hospital, Bergen, Norway
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ABSTRACT

Variable number of tandem repeat (VNTR) sequences present in the genome can have functional consequences that contribute to human disease. This is the case for the CEL gene, which encodes the digestive enzyme carboxyl ester lipase. CEL has a VNTR located in exon 11, and rare single-base deletions (DELs) within this region cause MODY8, an inherited disorder characterized by exocrine pancreatic dysfunction and diabetes. Here, we have studied how the position of single-base deletions within the CEL VNTR affects the protein’s pathogenic properties. We investigated four naturally occurring CEL variants with single-base deletions in different VNTR segments (DEL1, DEL4, DEL9, DEL13), of which only DEL1 and DEL4 have been observed in MODY8 patients. When expressed in a cellular model system, only DEL1 and DEL4 exhibited significantly reduced secretion and increased intracellular aggregation compared to normal CEL. We found that all DEL variants had slightly decreased enzymatic activity and that their level of O-glycosylation was affected. Moreover, only DEL1 and DEL4 significantly increased endoplasmic reticulum (ER) stress. In conclusion, CEL single-base deletion variants have the highest pathogenic potential when the mutational event has taken place in the proximal VNTR part, resulting in the longest aberrant protein tails. Thus, DEL1 and DEL4 are pathogenic CEL variants, whereas we consider DEL13 as benign and DEL9 as likely benign. These findings have implications for our understanding of how CEL mutations cause pancreatic disease through protein misfolding and proteotoxicity, leading to ER stress and activation of the unfolded protein response.

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Posted December 24, 2020.
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The position of single-base deletions in the VNTR sequence of the carboxyl ester lipase (CEL) gene determines pathogenicity
Anny Gravdal, Xunjun Xiao, Miriam Cnop, Khadija El Jellas, Pål R. Njølstad, Mark E. Lowe, Bente B. Johansson, Anders Molven, Karianne Fjeld
bioRxiv 2020.12.23.424204; doi: https://doi.org/10.1101/2020.12.23.424204
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The position of single-base deletions in the VNTR sequence of the carboxyl ester lipase (CEL) gene determines pathogenicity
Anny Gravdal, Xunjun Xiao, Miriam Cnop, Khadija El Jellas, Pål R. Njølstad, Mark E. Lowe, Bente B. Johansson, Anders Molven, Karianne Fjeld
bioRxiv 2020.12.23.424204; doi: https://doi.org/10.1101/2020.12.23.424204

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