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The mechanism of SARS-CoV-2 nucleocapsid protein recognition by the human 14-3-3 proteins

Kristina V. Tugaeva, Dorothy E. D. P. Hawkins, Jake L. R. Smith, View ORCID ProfileOliver W. Bayfield, De-Sheng Ker, Andrey A. Sysoev, Oleg I. Klychnikov, View ORCID ProfileAlfred A. Antson, View ORCID ProfileNikolai N. Sluchanko
doi: https://doi.org/10.1101/2020.12.26.424450
Kristina V. Tugaeva
1A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia
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Dorothy E. D. P. Hawkins
2York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom
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Jake L. R. Smith
2York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom
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Oliver W. Bayfield
2York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom
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De-Sheng Ker
2York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom
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Andrey A. Sysoev
1A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia
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Oleg I. Klychnikov
3Department of Biochemistry, School of Biology, M.V. Lomonosov Moscow State University, 119991, Moscow, Russia
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Alfred A. Antson
2York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom
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  • For correspondence: nikolai.sluchanko@mail.ru fred.antson@york.ac.uk
Nikolai N. Sluchanko
1A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia
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  • For correspondence: nikolai.sluchanko@mail.ru fred.antson@york.ac.uk
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Abstract

The coronavirus nucleocapsid protein (N) controls viral genome packaging and contains numerous phosphorylation sites located within unstructured regions. Phosphorylated SARS-CoV N was shown to bind to the host 14-3-3 protein in the cytoplasm. Proteomic data indicate that seven human 14-3-3 proteins are highly abundant in human tissues vulnerable to SARS-CoV-2 infection, collectively reaching ~1.8% of all proteins in the lungs, ~1.4% in the gastrointestinal system, ~2.3% in the nervous system. Although the association between 14-3-3 and SARS-CoV-2 N proteins can represent one of the key host-pathogen interactions, its mechanism and the specific critical phosphosites were unknown. Here, we show that phosphorylated SARS-CoV-2 N protein (pN) dimers, reconstituted via bacterial co-expression with protein kinase A, directly associate, in a phosphorylation-dependent manner, with the dimeric 14-3-3 protein hub, but not with its monomeric mutant. We demonstrate that pN is recognized by all seven human 14-3-3 isoforms with various efficiencies and determine the apparent KD to selected isoforms in a low micromolar range. Serial truncations pinpointed a critical phosphorylation site to Ser197, located within the SR-rich region of N. The tight 14-3-3/pN association suggests it could regulate nucleocytoplasmic shuttling of N, while hijacking cellular pathways by 14-3-3 sequestration. As such, the assembly may represent a valuable target for therapeutic intervention.

Competing Interest Statement

The authors have declared no competing interest.

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Posted December 27, 2020.
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The mechanism of SARS-CoV-2 nucleocapsid protein recognition by the human 14-3-3 proteins
Kristina V. Tugaeva, Dorothy E. D. P. Hawkins, Jake L. R. Smith, Oliver W. Bayfield, De-Sheng Ker, Andrey A. Sysoev, Oleg I. Klychnikov, Alfred A. Antson, Nikolai N. Sluchanko
bioRxiv 2020.12.26.424450; doi: https://doi.org/10.1101/2020.12.26.424450
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The mechanism of SARS-CoV-2 nucleocapsid protein recognition by the human 14-3-3 proteins
Kristina V. Tugaeva, Dorothy E. D. P. Hawkins, Jake L. R. Smith, Oliver W. Bayfield, De-Sheng Ker, Andrey A. Sysoev, Oleg I. Klychnikov, Alfred A. Antson, Nikolai N. Sluchanko
bioRxiv 2020.12.26.424450; doi: https://doi.org/10.1101/2020.12.26.424450

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