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High resolution copy number inference in cancer using short-molecule nanopore sequencing

Timour Baslan, Sam Kovaka, View ORCID ProfileFritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Scott W. Lowe, Sara Goodwin, View ORCID ProfileMichael C. Schatz
doi: https://doi.org/10.1101/2020.12.28.424602
Timour Baslan
1Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA
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  • For correspondence: baslant@mskcc.org mschatz@cs.jhu.edu
Sam Kovaka
2Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA
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Fritz J. Sedlazeck
3Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
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  • ORCID record for Fritz J. Sedlazeck
Yanming Zhang
4Cytogenetics Laboratory, Memorial Sloan Kettering Cancer Center, New York, NY, USA
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Robert Wappel
5Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
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Scott W. Lowe
1Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA
6Howard Hughes Medical Institute, Chevy Chase, MD, USA
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Sara Goodwin
5Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
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Michael C. Schatz
2Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA
5Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
7Department of Biology, Johns Hopkins University, Baltimore, MD, USA
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  • ORCID record for Michael C. Schatz
  • For correspondence: baslant@mskcc.org mschatz@cs.jhu.edu
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  • Supplemental Figure 1[supplements/424602_file07.pdf]
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  • Supplemental Figure 4[supplements/424602_file10.pdf]
  • Supplemental Figure 5[supplements/424602_file11.pdf]
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Posted December 29, 2020.
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High resolution copy number inference in cancer using short-molecule nanopore sequencing
Timour Baslan, Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Scott W. Lowe, Sara Goodwin, Michael C. Schatz
bioRxiv 2020.12.28.424602; doi: https://doi.org/10.1101/2020.12.28.424602
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High resolution copy number inference in cancer using short-molecule nanopore sequencing
Timour Baslan, Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Scott W. Lowe, Sara Goodwin, Michael C. Schatz
bioRxiv 2020.12.28.424602; doi: https://doi.org/10.1101/2020.12.28.424602

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