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SANS serif: alignment-free, whole-genome based phylogenetic reconstruction

View ORCID ProfileAndreas Rempel, View ORCID ProfileRoland Wittler
doi: https://doi.org/10.1101/2020.12.31.424643
Andreas Rempel
1Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615 Bielefeld, Germany
2Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615 Bielefeld, Germany
3Graduate School “Digital Infrastructure for the Life Sciences” (DILS), Bielefeld University, 33615 Bielefeld, Germany
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  • For correspondence: andreas.rempel@uni-bielefeld.de
Roland Wittler
1Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615 Bielefeld, Germany
2Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615 Bielefeld, Germany
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Abstract

Summary SANS serif is a novel software for alignment-free, whole-genome based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network.

Availability and Implementation Implemented in C++ and supported on Linux, MacOS, and Windows. The source code is freely available for download at https://gitlab.ub.uni-bielefeld.de/gi/sans.

Contact andreas.rempel{at}uni-bielefeld.de

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://gitlab.ub.uni-bielefeld.de/gi/sans

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 03, 2021.
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SANS serif: alignment-free, whole-genome based phylogenetic reconstruction
Andreas Rempel, Roland Wittler
bioRxiv 2020.12.31.424643; doi: https://doi.org/10.1101/2020.12.31.424643
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SANS serif: alignment-free, whole-genome based phylogenetic reconstruction
Andreas Rempel, Roland Wittler
bioRxiv 2020.12.31.424643; doi: https://doi.org/10.1101/2020.12.31.424643

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