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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Luz Garcia-Alonso, Louis-François Handfield, Kenny Roberts, Konstantina Nikolakopoulou, Ridma C. Fernando, Lucy Gardner, Ben Woodhams, Anna Arutyunyan, Krzysztof Polanski, Regina Hoo, Carmen Sancho-Serra, Tong Li, Kwasi Kwakwa, Elizabeth Tuck, Vitalii Kleshchevnikov, Aleksandra Tarkowska, Tarryn Porter, Cecilia Icoresi Mazzeo, Stijn van Dongen, Monika Dabrowska, Vasyl Vaskivskyi, Krishna T. Mahbubani, Jong-eun Park, Mercedes Jimenez-Linan, Lia Campos, Vladimir Kiselev, Cecilia Lindskog, Paul Ayuk, Elena Prigmore, Michael R Stratton, Kourosh Saeb-Parsy, Ashley Moffett, Luiza Moore, Omer A. Bayraktar, Sarah A. Teichmann, Margherita Y. Turco, Roser Vento-Tormo
doi: https://doi.org/10.1101/2021.01.02.425073
Luz Garcia-Alonso
1Wellcome Sanger Institute, Cambridge, UK
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Louis-François Handfield
1Wellcome Sanger Institute, Cambridge, UK
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Kenny Roberts
1Wellcome Sanger Institute, Cambridge, UK
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Konstantina Nikolakopoulou
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
3Department of Pathology, University of Cambridge, Cambridge, UK
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Ridma C. Fernando
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
3Department of Pathology, University of Cambridge, Cambridge, UK
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Lucy Gardner
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
3Department of Pathology, University of Cambridge, Cambridge, UK
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Ben Woodhams
1Wellcome Sanger Institute, Cambridge, UK
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Anna Arutyunyan
1Wellcome Sanger Institute, Cambridge, UK
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
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Krzysztof Polanski
1Wellcome Sanger Institute, Cambridge, UK
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Regina Hoo
1Wellcome Sanger Institute, Cambridge, UK
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
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Carmen Sancho-Serra
1Wellcome Sanger Institute, Cambridge, UK
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Tong Li
1Wellcome Sanger Institute, Cambridge, UK
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Kwasi Kwakwa
4EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, UK
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Elizabeth Tuck
1Wellcome Sanger Institute, Cambridge, UK
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Vitalii Kleshchevnikov
1Wellcome Sanger Institute, Cambridge, UK
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Aleksandra Tarkowska
1Wellcome Sanger Institute, Cambridge, UK
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Tarryn Porter
1Wellcome Sanger Institute, Cambridge, UK
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Cecilia Icoresi Mazzeo
1Wellcome Sanger Institute, Cambridge, UK
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Stijn van Dongen
1Wellcome Sanger Institute, Cambridge, UK
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Monika Dabrowska
1Wellcome Sanger Institute, Cambridge, UK
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Vasyl Vaskivskyi
1Wellcome Sanger Institute, Cambridge, UK
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Krishna T. Mahbubani
5Department of Surgery, University of Cambridge, Cambridge, UK
6Cambridge NIHR Biomedical Research Centre, Cambridge, UK
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Jong-eun Park
1Wellcome Sanger Institute, Cambridge, UK
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Mercedes Jimenez-Linan
7Department of Pathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK
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Lia Campos
1Wellcome Sanger Institute, Cambridge, UK
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Vladimir Kiselev
1Wellcome Sanger Institute, Cambridge, UK
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Cecilia Lindskog
8Department of Immunology, Genetics and Pathology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden
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Paul Ayuk
9Newcastle University, Newcastle, UK
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Elena Prigmore
1Wellcome Sanger Institute, Cambridge, UK
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Michael R Stratton
1Wellcome Sanger Institute, Cambridge, UK
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Kourosh Saeb-Parsy
5Department of Surgery, University of Cambridge, Cambridge, UK
6Cambridge NIHR Biomedical Research Centre, Cambridge, UK
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Ashley Moffett
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
3Department of Pathology, University of Cambridge, Cambridge, UK
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Luiza Moore
1Wellcome Sanger Institute, Cambridge, UK
7Department of Pathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK
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Omer A. Bayraktar
1Wellcome Sanger Institute, Cambridge, UK
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  • For correspondence: rv4@sanger.ac.uk
Sarah A. Teichmann
1Wellcome Sanger Institute, Cambridge, UK
10Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, JJ Thomson Ave, Cambridge CB3 0HE, UK
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  • For correspondence: rv4@sanger.ac.uk
Margherita Y. Turco
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
3Department of Pathology, University of Cambridge, Cambridge, UK
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  • For correspondence: rv4@sanger.ac.uk
Roser Vento-Tormo
1Wellcome Sanger Institute, Cambridge, UK
2Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
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  • For correspondence: rv4@sanger.ac.uk
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Abstract

The endometrium, the mucosal lining of the uterus, undergoes dynamic changes throughout the menstrual cycle in response to ovarian hormones. We have generated single-cell and spatial reference maps of the human uterus and 3D endometrial organoid cultures. We dissect the signalling pathways that determine cell fate of the epithelial lineages in the lumenal and glandular microenvironments. Our benchmark of the endometrial organoids highlights common pathways regulating the differentiation of secretory and ciliated lineage in vivo and in vitro. We show in vitro that downregulation of WNT or NOTCH pathways increases the differentiation efficiency along the secretory and ciliated lineages, respectively. These mechanistic insights provide a platform for future development of treatments for a range of common endometrial disorders including endometriosis and carcinoma.

Competing Interest Statement

In the past three years, S.A.T has worked as a consultant for Genentech and Roche, and is a remunerated member of the Scientific Advisory Boards of Biogen, GlaxoSmithKline and Foresite Labs.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 04, 2021.
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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Luz Garcia-Alonso, Louis-François Handfield, Kenny Roberts, Konstantina Nikolakopoulou, Ridma C. Fernando, Lucy Gardner, Ben Woodhams, Anna Arutyunyan, Krzysztof Polanski, Regina Hoo, Carmen Sancho-Serra, Tong Li, Kwasi Kwakwa, Elizabeth Tuck, Vitalii Kleshchevnikov, Aleksandra Tarkowska, Tarryn Porter, Cecilia Icoresi Mazzeo, Stijn van Dongen, Monika Dabrowska, Vasyl Vaskivskyi, Krishna T. Mahbubani, Jong-eun Park, Mercedes Jimenez-Linan, Lia Campos, Vladimir Kiselev, Cecilia Lindskog, Paul Ayuk, Elena Prigmore, Michael R Stratton, Kourosh Saeb-Parsy, Ashley Moffett, Luiza Moore, Omer A. Bayraktar, Sarah A. Teichmann, Margherita Y. Turco, Roser Vento-Tormo
bioRxiv 2021.01.02.425073; doi: https://doi.org/10.1101/2021.01.02.425073
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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Luz Garcia-Alonso, Louis-François Handfield, Kenny Roberts, Konstantina Nikolakopoulou, Ridma C. Fernando, Lucy Gardner, Ben Woodhams, Anna Arutyunyan, Krzysztof Polanski, Regina Hoo, Carmen Sancho-Serra, Tong Li, Kwasi Kwakwa, Elizabeth Tuck, Vitalii Kleshchevnikov, Aleksandra Tarkowska, Tarryn Porter, Cecilia Icoresi Mazzeo, Stijn van Dongen, Monika Dabrowska, Vasyl Vaskivskyi, Krishna T. Mahbubani, Jong-eun Park, Mercedes Jimenez-Linan, Lia Campos, Vladimir Kiselev, Cecilia Lindskog, Paul Ayuk, Elena Prigmore, Michael R Stratton, Kourosh Saeb-Parsy, Ashley Moffett, Luiza Moore, Omer A. Bayraktar, Sarah A. Teichmann, Margherita Y. Turco, Roser Vento-Tormo
bioRxiv 2021.01.02.425073; doi: https://doi.org/10.1101/2021.01.02.425073

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