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Structural and Functional Analyses Explain Pea KAI2 Receptor Diversity and Reveal Stereoselective Catalysis During Signal Perception

View ORCID ProfileAngelica M. Guercio, View ORCID ProfileSalar Torabi, David Cornu, View ORCID ProfileMarion Dalmais, View ORCID ProfileAbdelhafid Bendahmane, View ORCID ProfileChristine Le Signor, Jean-Paul Pillot, Philippe Le Bris, View ORCID ProfileFrançois-Didier Boyer, View ORCID ProfileCatherine Rameau, View ORCID ProfileCaroline Gutjahr, View ORCID ProfileAlexandre de Saint Germain, View ORCID ProfileNitzan Shabek
doi: https://doi.org/10.1101/2021.01.06.425465
Angelica M. Guercio
1Department of Plant Biology, University of California – Davis, Davis, CA 95616
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Salar Torabi
2Plant Genetics, TUM School of Life Sciences, Technical University of Munich (TUM), 85354 Freising
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David Cornu
3Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France
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Marion Dalmais
4Institute of Plant Sciences Paris-Saclay (IPS2), INRAE, CNRS, Université Paris-Sud, Université d’Evry, Université Paris-Diderot, 91405 Orsay, France
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Abdelhafid Bendahmane
4Institute of Plant Sciences Paris-Saclay (IPS2), INRAE, CNRS, Université Paris-Sud, Université d’Evry, Université Paris-Diderot, 91405 Orsay, France
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Christine Le Signor
5Agroécologie, AgroSup Dijon, INRAE, Univ Bourgogne, Univ Bourgogne Franche-Comté, 21000 Dijon, France
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Jean-Paul Pillot
6Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000, Versailles, France
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Philippe Le Bris
6Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000, Versailles, France
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François-Didier Boyer
7Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198, Gif-sur-Yvette, France
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Catherine Rameau
6Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000, Versailles, France
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Caroline Gutjahr
2Plant Genetics, TUM School of Life Sciences, Technical University of Munich (TUM), 85354 Freising
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Alexandre de Saint Germain
6Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000, Versailles, France
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  • For correspondence: nshabek@ucdavis.edu Alexandre.De-Saint-Germain@inrae.fr
Nitzan Shabek
1Department of Plant Biology, University of California – Davis, Davis, CA 95616
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  • For correspondence: nshabek@ucdavis.edu Alexandre.De-Saint-Germain@inrae.fr
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Abstract

KAI2 are plant α/β hydrolase receptors, which perceive smoke-derived butenolide signals (karrikins) and putative endogenous, yet unidentified phytohormones (KAI2-ligands, KLs). The number of functional KAI2 receptors varies among plant species. It has been suggested that KAI2 gene duplication and sub-functionalization plays an adaptative role for diverse environments or ligand diversification by altering the receptor responsiveness to specific KLs. Legumes represent one of the largest families of flowering plants and contain many essential agronomic crops. Prior to legume diversification, KAI2 underwent duplication, resulting in KAI2A and KAI2B. Integrating plant genetics, ligand perception and enzymatic assays, and protein crystallography, we demonstrate that Pisum sativum KAI2A and KAI2B act as receptors and enzymes with divergent ligand stereoselectivity. KAI2B has a stronger affinity than KAI2A towards the KAI2-ligand (-)-GR24 and remarkably hydrolyses a broader range of substrates including the strigolactone-like isomer (+)-GR24. We determine the crystal structures of PsKAI2B in apo and butenolide-bound states. The biochemical and structural analyses as well as recorded mass spectra of KAI2s reveal a transient intermediate on the catalytic serine and a stable adduct on the catalytic histidine, further illuminating the role of KAI2 not only as receptors but also as bona fide enzymes. Our work uncovers the stereoselectivity of ligand perception and catalysis by evolutionarily diverged KAI2 receptors in KAR/KL signaling pathways and proposes adaptive sensitivity to KAR/KL and strigolactone phytohormones by KAI2B.

Competing Interest Statement

N.S. has an equity interest in Oerth Bio and serves on the company Scientific Advisory Board. The work and data submitted here have no competing interests or other interests that might be perceived to influence the results or discussion reported in this paper.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted August 31, 2021.
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Structural and Functional Analyses Explain Pea KAI2 Receptor Diversity and Reveal Stereoselective Catalysis During Signal Perception
Angelica M. Guercio, Salar Torabi, David Cornu, Marion Dalmais, Abdelhafid Bendahmane, Christine Le Signor, Jean-Paul Pillot, Philippe Le Bris, François-Didier Boyer, Catherine Rameau, Caroline Gutjahr, Alexandre de Saint Germain, Nitzan Shabek
bioRxiv 2021.01.06.425465; doi: https://doi.org/10.1101/2021.01.06.425465
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Structural and Functional Analyses Explain Pea KAI2 Receptor Diversity and Reveal Stereoselective Catalysis During Signal Perception
Angelica M. Guercio, Salar Torabi, David Cornu, Marion Dalmais, Abdelhafid Bendahmane, Christine Le Signor, Jean-Paul Pillot, Philippe Le Bris, François-Didier Boyer, Catherine Rameau, Caroline Gutjahr, Alexandre de Saint Germain, Nitzan Shabek
bioRxiv 2021.01.06.425465; doi: https://doi.org/10.1101/2021.01.06.425465

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