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Partition Quantitative Assessment (PQA): A quantitative methodology to assess the embedded noise in clustered omics and systems biology data

Diego A. Camacho-Hernández, Victor E. Nieto-Caballero, José E. León-Burguete, View ORCID ProfileJulio A. Freyre-González
doi: https://doi.org/10.1101/2021.01.08.425967
Diego A. Camacho-Hernández
1Regulatory Systems Biology Research Group, Laboratory of Systems and Synthetic Biology, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
2Undergraduate Program in Genomic Sciences, Center for Genomic Sciences, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
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Victor E. Nieto-Caballero
1Regulatory Systems Biology Research Group, Laboratory of Systems and Synthetic Biology, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
2Undergraduate Program in Genomic Sciences, Center for Genomic Sciences, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
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José E. León-Burguete
1Regulatory Systems Biology Research Group, Laboratory of Systems and Synthetic Biology, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
2Undergraduate Program in Genomic Sciences, Center for Genomic Sciences, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
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Julio A. Freyre-González
1Regulatory Systems Biology Research Group, Laboratory of Systems and Synthetic Biology, Universidad Nacional Autónoma de México (UNAM), Morelos, Mexico
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  • ORCID record for Julio A. Freyre-González
  • For correspondence: jfreyre@ccg.unam.mx
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Abstract

Identifying groups that share common features among datasets through clustering analysis is a typical problem in many fields of science, particularly in post-omics and systems biology research. In respect of this, quantifying how a measure can cluster or organize intrinsic groups is important since currently there is no statistical evaluation of how ordered is, or how much noise is embedded in the resulting clustered vector. Many of the literature focuses on how well the clustering algorithm orders the data, with several measures regarding external and internal statistical measures; but none measure has been developed to statistically quantify the noise in an arranged vector posterior a clustering algorithm, i.e., how much of the clustering is due to randomness. Here, we present a quantitative methodology, based on autocorrelation, to assess this problem.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted January 09, 2021.
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Partition Quantitative Assessment (PQA): A quantitative methodology to assess the embedded noise in clustered omics and systems biology data
Diego A. Camacho-Hernández, Victor E. Nieto-Caballero, José E. León-Burguete, Julio A. Freyre-González
bioRxiv 2021.01.08.425967; doi: https://doi.org/10.1101/2021.01.08.425967
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Partition Quantitative Assessment (PQA): A quantitative methodology to assess the embedded noise in clustered omics and systems biology data
Diego A. Camacho-Hernández, Victor E. Nieto-Caballero, José E. León-Burguete, Julio A. Freyre-González
bioRxiv 2021.01.08.425967; doi: https://doi.org/10.1101/2021.01.08.425967

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