Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Species substitution in the meat value chain by high-resolution melt analysis of mitochondrial PCR products

View ORCID ProfileJane K. Njaramba, View ORCID ProfileLillian Wambua, Titus Mukiama, View ORCID ProfileNelson Onzere Amugune, View ORCID ProfileJandouwe Villinger
doi: https://doi.org/10.1101/2021.01.12.426171
Jane K. Njaramba
1, P.O. Box 30772 - 00100, Nairobi, Kenya
2University of Nairobi, School of Biological Sciences, P.O. Box 30197–00100, Nairobi, Kenya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jane K. Njaramba
Lillian Wambua
3International Livestock Research Institute, Animal and Human Health division, P.O Box 30709 – 00100 Nairobi, Kenya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Lillian Wambua
  • For correspondence: wambua.lillian@gmail.com
Titus Mukiama
2University of Nairobi, School of Biological Sciences, P.O. Box 30197–00100, Nairobi, Kenya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nelson Onzere Amugune
2University of Nairobi, School of Biological Sciences, P.O. Box 30197–00100, Nairobi, Kenya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Nelson Onzere Amugune
Jandouwe Villinger
1, P.O. Box 30772 - 00100, Nairobi, Kenya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jandouwe Villinger
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Food fraud in several value chains including meat, fish, and vegetables has gained global interest in recent years. In the meat value chain, substitution of high commercial-value meats with similar cheaper or undesirable species is a common form of food fraud that raises ethical, religious, and dietary concerns. The presence of undeclared species could also pose public health risks caused by allergic reactions and the transmission of food-borne or zoonotic pathogens. Measures to monitor meat substitution are being put in place in many developed countries. However, information about similar efforts in sub-Saharan Africa is sparse. In this study, we used PCR coupled with high-resolution melting (PCR-HRM) analysis targeting the three mitochondrial genes, cytochrome oxidase 1 (CO1), cytochrome b (cyt b), and 16S rRNA, to detect species substitution in meat sold to consumers in Nairobi, Kenya’s capital city. Out of 107 meat samples from seven common livestock animals (cattle, goat, sheep, pig, chicken, rabbit, and camel), 11 (10.3%) had been substituted. Of 61 samples sold as beef, two were goat and one was camel. Of 30 samples sold as goat meat, four were mutton (sheep) and three were beef. One of nine samples purchased as pork was beef. Our results indicate that PCR-HRM analysis is a cost and time effective technique that can be employed to detect species substitution. The combined use of the three markers produced PCR-HRM profiles that successfully allowed the distinction of species. We demonstrate its utility not only in analysis of raw meat samples, but also of cooked, dried, and rotten samples, meat mixtures, and with the use of different DNA extraction protocols. We propose that this approach has broad applications in authentication of meat products and protection of consumers from food fraud in the meat industry in low- and middle-income countries such as Kenya, as well as in the developed world.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted January 12, 2021.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Species substitution in the meat value chain by high-resolution melt analysis of mitochondrial PCR products
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Species substitution in the meat value chain by high-resolution melt analysis of mitochondrial PCR products
Jane K. Njaramba, Lillian Wambua, Titus Mukiama, Nelson Onzere Amugune, Jandouwe Villinger
bioRxiv 2021.01.12.426171; doi: https://doi.org/10.1101/2021.01.12.426171
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
Species substitution in the meat value chain by high-resolution melt analysis of mitochondrial PCR products
Jane K. Njaramba, Lillian Wambua, Titus Mukiama, Nelson Onzere Amugune, Jandouwe Villinger
bioRxiv 2021.01.12.426171; doi: https://doi.org/10.1101/2021.01.12.426171

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Molecular Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (2410)
  • Biochemistry (4763)
  • Bioengineering (3307)
  • Bioinformatics (14600)
  • Biophysics (6598)
  • Cancer Biology (5138)
  • Cell Biology (7387)
  • Clinical Trials (138)
  • Developmental Biology (4328)
  • Ecology (6834)
  • Epidemiology (2057)
  • Evolutionary Biology (9854)
  • Genetics (7317)
  • Genomics (9478)
  • Immunology (4515)
  • Microbiology (12603)
  • Molecular Biology (4907)
  • Neuroscience (28142)
  • Paleontology (198)
  • Pathology (799)
  • Pharmacology and Toxicology (1373)
  • Physiology (2000)
  • Plant Biology (4458)
  • Scientific Communication and Education (970)
  • Synthetic Biology (1293)
  • Systems Biology (3896)
  • Zoology (719)