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Decoding shared versus divergent transcriptomic signatures across cortico-amygdala circuitry in PTSD and depressive disorders

View ORCID ProfileAndrew E. Jaffe, Brianna K. Barry, Ran Tao, Matthew N. Tran, Stephanie C. Page, Kristen R. Maynard, Elizabeth A. Pattie, Claudia V. Nguyen, Amy Deep-Soboslay, Rahul Bharadwaj, Keith A. Young, Matthew J. Friedman, Douglas E. Williamson, Traumatic Stress Brain Research Group, Joo Heon Shin, Thomas M. Hyde, Keri Martinowich, Joel E. Kleinman
doi: https://doi.org/10.1101/2021.01.12.426438
Andrew E. Jaffe
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
2Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
3Department of Genetic Medicine, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
4Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
5Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA
6Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA
7Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA
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  • For correspondence: andrew.jaffe@libd.org keri.martinowich@libd.org joel.kleinman@libd.org
Brianna K. Barry
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
2Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
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Ran Tao
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Matthew N. Tran
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
3Department of Genetic Medicine, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
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Stephanie C. Page
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Kristen R. Maynard
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Elizabeth A. Pattie
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Claudia V. Nguyen
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Amy Deep-Soboslay
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Rahul Bharadwaj
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Keith A. Young
8Department of Psychiatry and Behavioral Sciences, Texas A&M College of Medicine, Bryan TX, 77807, USA
9Department of Veterans Affairs, VISN 17 Center of Excellence for Research on Returning War Veterans, Waco, TX, 76711, USA
10Central Texas Veterans Health Care System, Temple, TX, 76504, USA
11Baylor Scott & White Psychiatry, Temple, TX, 76508, USA
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Matthew J. Friedman
12Department of Psychiatry, Geisel School of Medicine at Dartmouth, Dartmouth Hanover, NH, USA
13National Center for PTSD, U.S. Department of Veterans Affairs
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Douglas E. Williamson
14Duke Department of Psychiatry and Behavioral Sciences, Duke University Medical Center, 300 North Duke St, Durham, North Carolina, 27701 USA
15Durham VA Healthcare System, 508 Fulton St, Durham, North Carolina, 27705 USA
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16Traumatic Stress Brain Research Group
Joo Heon Shin
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
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Thomas M. Hyde
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
4Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
17Department of Neurology, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
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Keri Martinowich
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
2Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
4Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA
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  • For correspondence: andrew.jaffe@libd.org keri.martinowich@libd.org joel.kleinman@libd.org
Joel E. Kleinman
1Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
8Department of Psychiatry and Behavioral Sciences, Texas A&M College of Medicine, Bryan TX, 77807, USA
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  • For correspondence: andrew.jaffe@libd.org keri.martinowich@libd.org joel.kleinman@libd.org
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Abstract

Post-traumatic stress disorder (PTSD) is a debilitating neuropsychiatric disease with a projected lifetime risk of 8.7%. PTSD is highly comorbid with depressive disorders including major depressive disorder (MDD) and bipolar disorder (BD). It is hypothesized that the overlap in symptoms stems from partially shared underlying neurobiological mechanisms. To better understand shared and unique transcriptional patterns of PTSD and MDD we performed RNA-sequencing in the postmortem brain of two prefrontal cortex (PFC) regions and two amygdala (AMY) regions, from neurotypical donors (N=109) as well as donors with diagnoses of PTSD (N=107) or MDD (N=109) across 1285 RNA-seq samples. We identified a small number of differentially expressed genes (DEGs) specific to PTSD, mostly in the cortex compared to amygdala. PTSD-specific DEGs were preferentially enriched in cortistatin-expressing cells, a subpopulation of somatostatin interneurons. These PTSD DEGs also showed strong enrichment for gene sets associated with immune-related pathways and microglia, largely driven by decreased expression of these genes in PTSD donors. While we identified a greater number of DEGs for MDD, there were only a few that were specific to MDD as they showed high overlap with PTSD DEGs. Finally, we used weighted gene co-expression network analysis (WGCNA) as an orthogonal approach to confirm the observed cellular and molecular associations. These findings highlight the sub-population of cortistatin-expressing interneurons as having potential functional significance in PTSD and provide supporting evidence for dysregulated neuroinflammation and immune signaling in MDD and PTSD pathophysiology.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Decoding shared versus divergent transcriptomic signatures across cortico-amygdala circuitry in PTSD and depressive disorders
Andrew E. Jaffe, Brianna K. Barry, Ran Tao, Matthew N. Tran, Stephanie C. Page, Kristen R. Maynard, Elizabeth A. Pattie, Claudia V. Nguyen, Amy Deep-Soboslay, Rahul Bharadwaj, Keith A. Young, Matthew J. Friedman, Douglas E. Williamson, Traumatic Stress Brain Research Group, Joo Heon Shin, Thomas M. Hyde, Keri Martinowich, Joel E. Kleinman
bioRxiv 2021.01.12.426438; doi: https://doi.org/10.1101/2021.01.12.426438
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Decoding shared versus divergent transcriptomic signatures across cortico-amygdala circuitry in PTSD and depressive disorders
Andrew E. Jaffe, Brianna K. Barry, Ran Tao, Matthew N. Tran, Stephanie C. Page, Kristen R. Maynard, Elizabeth A. Pattie, Claudia V. Nguyen, Amy Deep-Soboslay, Rahul Bharadwaj, Keith A. Young, Matthew J. Friedman, Douglas E. Williamson, Traumatic Stress Brain Research Group, Joo Heon Shin, Thomas M. Hyde, Keri Martinowich, Joel E. Kleinman
bioRxiv 2021.01.12.426438; doi: https://doi.org/10.1101/2021.01.12.426438

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