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BRD2 inhibition blocks SARS-CoV-2 infection in vitro by reducing transcription of the host cell receptor ACE2

Ruilin Tian, Avi J. Samelson, Veronica V. Rezelj, Merissa Chen, Gokul N. Ramadoss, Xiaoyan Guo, Alice Mac Kain, Quang Dinh Tran, View ORCID ProfileShion A. Lim, Irene Lui, James Nunez, Sarah J. Rockwood, Na Liu, View ORCID ProfileJared Carlson-Stevermer, View ORCID ProfileJennifer Oki, View ORCID ProfileTravis Maures, View ORCID ProfileKevin Holden, Jonathan S. Weissman, James A. Wells, Bruce Conklin, Marco Vignuzzi, View ORCID ProfileMartin Kampmann
doi: https://doi.org/10.1101/2021.01.19.427194
Ruilin Tian
1Institute for Neurodegenerative Diseases, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
3School of Medicine, Southern University of Science and Technology, Shenzhen, China 518055
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Avi J. Samelson
1Institute for Neurodegenerative Diseases, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
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Veronica V. Rezelj
4Institut Pasteur, Viral Populations and Pathogenesis Unit, CNRS UMR 3569, 75015 Paris, France
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Merissa Chen
1Institute for Neurodegenerative Diseases, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
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Gokul N. Ramadoss
5Gladstone Institutes, San Francisco, 94158, CA, USA
6Biomedical Sciences PhD Program, University of California, San Francisco, CA, USA
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Xiaoyan Guo
1Institute for Neurodegenerative Diseases, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
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Alice Mac Kain
4Institut Pasteur, Viral Populations and Pathogenesis Unit, CNRS UMR 3569, 75015 Paris, France
7École Doctorale BioSPC, Université de Paris, Sorbonne Paris Cité, 75006 Paris, France
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Quang Dinh Tran
4Institut Pasteur, Viral Populations and Pathogenesis Unit, CNRS UMR 3569, 75015 Paris, France
7École Doctorale BioSPC, Université de Paris, Sorbonne Paris Cité, 75006 Paris, France
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Shion A. Lim
8Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, 94158, USA
9Department of Antibody Engineering, Genentech Inc., South San Francisco, CA, 94080, USA
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  • ORCID record for Shion A. Lim
Irene Lui
8Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, 94158, USA
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James Nunez
10Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA
11Howard Hughes Medical Institute, University of California, San Francisco, CA 94158, USA
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Sarah J. Rockwood
5Gladstone Institutes, San Francisco, 94158, CA, USA
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Na Liu
3School of Medicine, Southern University of Science and Technology, Shenzhen, China 518055
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Jared Carlson-Stevermer
12Synthego Corporation, Redwood City, CA 94063, USA
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Jennifer Oki
12Synthego Corporation, Redwood City, CA 94063, USA
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Travis Maures
12Synthego Corporation, Redwood City, CA 94063, USA
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Kevin Holden
12Synthego Corporation, Redwood City, CA 94063, USA
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Jonathan S. Weissman
10Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA
11Howard Hughes Medical Institute, University of California, San Francisco, CA 94158, USA
13Whitehead Institute for Biomedical Research, Cambridge, 02142, USA
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James A. Wells
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
8Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, 94158, USA
10Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA
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Bruce Conklin
5Gladstone Institutes, San Francisco, 94158, CA, USA
15Innovative Genomics Institute, Berkeley, 94720, CA, USA
16Department of Ophthalmology, University of California, San Francisco, San Francisco, CA. 94158, USA
17Department of Medicine, University of California, San Francisco, San Francisco, CA, 94158, USA
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Marco Vignuzzi
4Institut Pasteur, Viral Populations and Pathogenesis Unit, CNRS UMR 3569, 75015 Paris, France
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Martin Kampmann
1Institute for Neurodegenerative Diseases, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
2Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA
18Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, 94158, USA
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  • ORCID record for Martin Kampmann
  • For correspondence: martin.kampmann@ucsf.edu
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Abstract

SARS-CoV-2 infection of human cells is initiated by the binding of the viral Spike protein to its cell-surface receptor ACE2. We conducted an unbiased CRISPRi screen to uncover druggable pathways controlling Spike protein binding to human cells. We found that the protein BRD2 is an essential node in the cellular response to SARS-CoV-2 infection. BRD2 is required for ACE2 transcription in human lung epithelial cells and cardiomyocytes, and BRD2 inhibitors currently evaluated in clinical trials potently block endogenous ACE2 expression and SARS-CoV-2 infection of human cells. BRD2 also controls transcription of several other genes induced upon SARS-CoV-2 infection, including the interferon response, which in turn regulates ACE2 levels. It is possible that the previously reported interaction between the viral E protein and BRD2 evolved to manipulate the transcriptional host response during SARS-CoV-2 infection. Together, our results pinpoint BRD2 as a potent and essential regulator of the host response to SARS-CoV-2 infection and highlight the potential of BRD2 as a novel therapeutic target for COVID-19.

Competing Interest Statement

JCS, JO, TM and KH are employees and shareholders of Synthego Corporation.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted January 19, 2021.
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BRD2 inhibition blocks SARS-CoV-2 infection in vitro by reducing transcription of the host cell receptor ACE2
Ruilin Tian, Avi J. Samelson, Veronica V. Rezelj, Merissa Chen, Gokul N. Ramadoss, Xiaoyan Guo, Alice Mac Kain, Quang Dinh Tran, Shion A. Lim, Irene Lui, James Nunez, Sarah J. Rockwood, Na Liu, Jared Carlson-Stevermer, Jennifer Oki, Travis Maures, Kevin Holden, Jonathan S. Weissman, James A. Wells, Bruce Conklin, Marco Vignuzzi, Martin Kampmann
bioRxiv 2021.01.19.427194; doi: https://doi.org/10.1101/2021.01.19.427194
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BRD2 inhibition blocks SARS-CoV-2 infection in vitro by reducing transcription of the host cell receptor ACE2
Ruilin Tian, Avi J. Samelson, Veronica V. Rezelj, Merissa Chen, Gokul N. Ramadoss, Xiaoyan Guo, Alice Mac Kain, Quang Dinh Tran, Shion A. Lim, Irene Lui, James Nunez, Sarah J. Rockwood, Na Liu, Jared Carlson-Stevermer, Jennifer Oki, Travis Maures, Kevin Holden, Jonathan S. Weissman, James A. Wells, Bruce Conklin, Marco Vignuzzi, Martin Kampmann
bioRxiv 2021.01.19.427194; doi: https://doi.org/10.1101/2021.01.19.427194

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