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Haploflow: Strain-resolved de novo assembly of viral genomes
View ORCID ProfileA. Fritz, View ORCID ProfileA. Bremges, Z.-L. Deng, View ORCID ProfileT.-R. Lesker, View ORCID ProfileJ. Götting, T. Ganzenmüller, View ORCID ProfileA. Sczyrba, View ORCID ProfileA. Dilthey, View ORCID ProfileF. Klawonn, View ORCID ProfileA.C. McHardy
doi: https://doi.org/10.1101/2021.01.25.428049
A. Fritz
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
2DZIF, German Centre for Infection Research
A. Bremges
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
2DZIF, German Centre for Infection Research
Z.-L. Deng
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
T.-R. Lesker
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
J. Götting
2DZIF, German Centre for Infection Research
3Institute of Virology, Hannover Medical School, Hannover, Germany
T. Ganzenmüller
2DZIF, German Centre for Infection Research
3Institute of Virology, Hannover Medical School, Hannover, Germany
4Institute for Medical Virology, University Hospital Tuebingen, Tuebingen, Germany
A. Sczyrba
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
5Faculty of Technology and Center for Biotechnology, Bielefeld University, Bielefeld, Germany
A. Dilthey
6Institute of Medical Microbiology and Hospital Hygiene, University Hospital, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany
7Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, 20892, USA
F. Klawonn
8Department of Computer Science, Ostfalia University of Applied Sciences, Wolfenbuettel, Germany
9Biostatistics Group, Helmholtz Centre for Infection Research, Braunschweig, Germany
A.C. McHardy
1BIFO, Department of Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
2DZIF, German Centre for Infection Research
Article usage
Posted January 26, 2021.
Haploflow: Strain-resolved de novo assembly of viral genomes
A. Fritz, A. Bremges, Z.-L. Deng, T.-R. Lesker, J. Götting, T. Ganzenmüller, A. Sczyrba, A. Dilthey, F. Klawonn, A.C. McHardy
bioRxiv 2021.01.25.428049; doi: https://doi.org/10.1101/2021.01.25.428049
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