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Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

Kathryn Davidson, View ORCID ProfilePaul Grevitt, Maria F. Contreras G., View ORCID ProfileKatherine S. Bridge, View ORCID ProfileMiguel Hermida, View ORCID ProfileKunal M. Shah, View ORCID ProfileFaraz K Mardakheh, View ORCID ProfileMark Stubbs, View ORCID ProfilePaul A. Clarke, View ORCID ProfileRosemary Burke, View ORCID ProfilePedro Casado-Izquierdo, View ORCID ProfilePedro R. Cutillas, Sarah A. Martin, View ORCID ProfileTyson V. Sharp
doi: https://doi.org/10.1101/2021.02.01.429178
Kathryn Davidson
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Paul Grevitt
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Maria F. Contreras G.
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Katherine S. Bridge
2University of York, Wentworth Way, York, YO10 5DD
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Miguel Hermida
3Department of Bioengineering, Imperial College, London
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Kunal M. Shah
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Faraz K Mardakheh
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Mark Stubbs
4Cancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, 15 Cotswold Road, Sutton, SM2 5NG
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Paul A. Clarke
4Cancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, 15 Cotswold Road, Sutton, SM2 5NG
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Rosemary Burke
4Cancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, 15 Cotswold Road, Sutton, SM2 5NG
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Pedro Casado-Izquierdo
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Pedro R. Cutillas
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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Sarah A. Martin
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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  • For correspondence: t.sharp@qmul.ac.uk sarah.martin@qmul.ac.uk
Tyson V. Sharp
1Barts Cancer Institute, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ
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  • ORCID record for Tyson V. Sharp
  • For correspondence: t.sharp@qmul.ac.uk sarah.martin@qmul.ac.uk
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Abstract

An early event in lung oncogenesis is loss of the tumour suppressor gene LIMD1 (LIM domains containing 1); this encodes a scaffold protein, which suppresses tumourigenesis via a number of different mechanisms. Approximately 45% of non-small cell lung cancers (NSCLC) are deficient in LIMD11, yet this subtype of NSCLC has been overlooked in preclinical and clinical investigations. Defining therapeutic targets in these LIMD1 loss-of-function patients is difficult due to a lack of ‘druggable’ targets, thus alternative approaches are required. To this end, we performed the first drug repurposing screen to identify compounds that confer synthetic lethality with LIMD1 loss in NSCLC cells. PF-477736 was shown to selectively target LIMD1 deficient cells in vitro through inhibition of multiple kinases, inducing cell death via apoptosis. Furthermore, PF-477736 was effective in treating LIMD1−/− tumors in subcutaneous xenograft models, with no significant effect in LIMD1+/+ cells. We have identified a novel drug tool with significant preclinical characterization that serves as an excellent candidate to explore and define LIMD1-deficient cancers as a new therapeutic subgroup of critical unmet need.

Significance Statement Here we provide the first proof-of-concept data validating the scope for development of a targeted therapy against the non-small cell lung cancers (NSCLC) subtypes deficient in expression of the LIMD1 tumor suppressor gene. Approximately 45% of NSCLC are deficient in LIMD11 representing at least 1.2 million lung cancer patients worldwide; yet this subtype has been ignored in preclinical and clinical investigations with no targeted therapies available. This seminal study applied synthetic lethality drug screening to target the loss/reduction of LIMD1 in lung cancer and normal cell lines, identifying and validating the multi-kinase inhibitor PF-477736 as a selectively cytotoxic compound towards LIMD1 deficient cells. This study provides rationale for further investigation into targeting LIMD1 loss in lung cancer, thereby addressing a critical unmet need for therapeutic approached to targeting LIMD1-deficent cancer subtypes.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 02, 2021.
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Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes
Kathryn Davidson, Paul Grevitt, Maria F. Contreras G., Katherine S. Bridge, Miguel Hermida, Kunal M. Shah, Faraz K Mardakheh, Mark Stubbs, Paul A. Clarke, Rosemary Burke, Pedro Casado-Izquierdo, Pedro R. Cutillas, Sarah A. Martin, Tyson V. Sharp
bioRxiv 2021.02.01.429178; doi: https://doi.org/10.1101/2021.02.01.429178
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Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes
Kathryn Davidson, Paul Grevitt, Maria F. Contreras G., Katherine S. Bridge, Miguel Hermida, Kunal M. Shah, Faraz K Mardakheh, Mark Stubbs, Paul A. Clarke, Rosemary Burke, Pedro Casado-Izquierdo, Pedro R. Cutillas, Sarah A. Martin, Tyson V. Sharp
bioRxiv 2021.02.01.429178; doi: https://doi.org/10.1101/2021.02.01.429178

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