Abstract
To investigate the role of the vasculature in pancreatic β-cell regeneration, we crossed a zebrafish β-cell ablation model into the avascular npas4l mutant (i.e. cloche). Surprisingly, β-cell regeneration increased markedly in npas4l mutants owing to the ectopic differentiation of β-cells in the mesenchyme, a phenotype not previously reported in any models. The ectopic β-cells expressed endocrine markers of pancreatic β-cells, and also reduced glucose levels in the β-cell ablation model. Through lineage tracing, we determined that the vast majority of these ectopic β-cells derived from the mesodermal lineage. Notably, ectopic β-cells were found in npas4l mutants as well as following knockdown of the endothelial determinant Etv2. Together, these data indicate that in the absence of endothelial specification, mesodermal cells possess a remarkable plasticity enabling them to form β-cells, which are normally endodermal in origin. Understanding the restriction of this differentiation plasticity will help exploit an alternative source for β-cell regeneration.
Introduction
The concept of embryonic development and cell fate determination was illustrated by the famous Waddington landscape model decades ago (Waddington, 1957). Waddington’s model not only shows the importance of spatiotemporal precision in cell differentiation but also metaphorizes cell fate determination as a sequential and irreversible event. In this hierarchical model, endoderm follows the lineage paths downwards and progressively differentiates into multiple endodermal cell types, including pancreatic β-cells. Likewise, mesoderm stays in the mesodermal lineage paths and differentiates into vasculature and other mesodermal cell types. However, in recent decades, multiple studies have suggested that committed cells are capable of differentiating across the germ layer border by converting embryonic and/or adult mesodermal fibroblasts into ectodermal neuronal cells (Vierbuchen et al., 2010), multipotent induced neural stem cells (Ring et al., 2012), endodermal hepatocyte-like cells (Huang et al., 2011; Sekiya & Suzuki, 2011) or pancreatic β-like cells (Zhu et al., 2016) in vitro. These studies highlight the feasibility of converting mesodermal cells into ectodermal or endodermal cells in vitro after the addition of factors.
Despite the extensive studies on cell fate conversion across germ layers in vitro, the number of in vivo studies is limited. Ectopic expression of Xsox17β in Xenopus embryos relocated cells normally fated for ectoderm to appear in the endodermal gut, suggesting a possible change in cell fate in vivo (Clements & Woodland, 2000). Furthermore, aggregated morulae and chimeric embryos of β-catenin mutants provided evidence of precardiac mesoderm formation in the endodermal region in vivo (Lickert et al., 2002). Unlike studies expressing ectopic transcription factors or inducing mutations, the study by Goldman and collaborators revealed endodermal cells differentiating into endothelial cells, which were believed to be mesodermal derivatives, during normal liver development in lineage-tracing mouse models (Goldman et al., 2014). These studies suggest that the classical in vivo germ layer border may not be as clear-cut as previously thought.
In this study, we aimed to elucidate the importance of the vasculature in pancreatic β-cell regeneration, which plays a crucial role in potential therapeutic strategies against diabetes. We employed cloche zebrafish mutants as an avascular model. The mutation of npas4l, a master regulator of endothelial and hematopoietic cell fates, is responsible for the severe loss of most blood vessels and blood cells in cloche mutants (Parker & Stainier, 1999; Reischauer et al., 2016; Stainier et al., 1995). Unexpectedly, the npas4l mutation induced ectopic β-cell formation in the mesenchymal region outside the pancreas and decreased the glucose level after β-cell ablation. Lineage-tracing mesodermal cells expressing draculin (drl) and etv2 validated the mesodermal lineage of the ectopic β-cells, which are normally endodermal in origin. These findings offer novel insights into cell fate determination and an alternative source of β-cells.
Results
Ectopic β-cell formation and improved glucose control in npas4l mutants
To determine the importance of vasculogenesis and vascularization for β-cell regeneration, we examined β-cell formation in zebrafish carrying the cloche mutation (npas4l−/−) after β-cell ablation, i.e., in the Tg(ins:Flag-NTR);Tg(ins:H2BGFP;ins:DsRed) model. Nitroreductase (NTR), expressed by the insulin promoter, converts the prodrug metronidazole (MTZ) to a cytotoxin to specifically ablate insulin-producing β-cells (Curado et al., 2007). The homozygous mutation of npas4l significantly increased the number of ins:H2BGFP-positive cells during the β-cell regeneration period (Figures 1A-C). In addition, we observed a distinctive ectopic β-cell population in the mesenchymal region outside the pancreas in the npas4l−/− group, an ectopic location that was very rarely observed in the sibling controls (including both wildtype siblings and heterozygous mutants). This ectopic population of β-cells contributed to the major increase in the number of ins:H2BGFP-positive cells during β-cell regeneration (Figure 1C). Moreover, the comparable and sparse numbers of ins:DsRed-positive cells in the controls and mutants indicate that the npas4l mutation did not enhance the survival of β-cells during the ablation (Figure 1A and B) because the extended maturation time of DsRed (Baird et al., 2000) restricted the detection of DsRed to the surviving β-cells.
To visualise the location of the ectopic β-cells better, we labelled the pancreas with ptf1a:GFP and observed not only a drastic reduction in the pancreas size (Figures 1D, E and Figure 1-figure supplement 1) but also the regeneration of β-cells clearly outside the ptf1a-expressing exocrine pancreas in npas4l mutants (Figure 1E). By labelling the mesenchyme with hand2:EGFP (Figure 1F-K), we further revealed that the majority of ectopic β-cells formed in npas4l mutants intermingled with hand2:EGFP-positive mesenchymal cells between the pronephros and the pancreas (Figures 1J and K). In addition, we occasionally observed ectopic β-cells intermingled with hand2:EGFP-positive mesenchymal cells ventral to the pancreas (Figures 1I and K). Although the ectopic β-cells were located among the mesenchymal cells, they did not express hand2:EGFP.
Additionally, we examined the sst2:RFP-positive δ-cell population in the npas4l mutants and revealed a small but significant increase outside the pancreas after δ-cell ablation (Figure 1-figure supplement 2), suggesting that the effect of homozygous npas4l mutation on ectopic endocrine cell formation is not limited to β-cells, albeit likely with a preference.
We further assessed the functionality and maturity of the ectopic β-cell population. We measured glucose levels in the control and npas4l−/− groups with or without β-cell ablation to examine whether the newly formed β-cells could restore glucose to a normal level. Without β-cell ablation, the mutation of npas4l did not alter the glucose level, indicating that the npas4l mutation does not influence glucose homeostasis in the basal state (Figure 1L). After β-cell ablation, we observed an increased level of glucose in the sibling controls, while the homozygous mutation of npas4l resulted in a glucose level comparable to that of the controls without β-cell ablation, suggesting that the ectopic β-cells induced by the npas4l mutation contribute to restoring a physiological glucose level.
The ectopic β-cells co-expressed insulin and endocrine markers in npas4l mutants
Next, we examined multiple pancreatic endocrine and β-cell markers, including Isl1, neurod1, pdx1, mnx1, pcsk1 and ascl1b (the functional homolog to Neurog3 in mammals), to validate the β-cell identity of the ectopic insulin-producing cells. The majority of ectopic β-cells co-expressed insulin and these markers during β-cell regeneration (Figure 2). The high co-expression of pcsk1 (Figures 2R-S and Figure 2-figure supplement 1), which encodes an enzyme necessary for insulin biosynthesis, indicates that most of the β-cells in the ectopic population are likely functional. Consistent with preceding findings in pancreatic β-cells, not all ectopic β-cells expressed ascl1b:GFP (Figures 2V-W and Figure 1-figure supplement 1), which suggests that ascl1b works as a transient endocrine cell fate regulator (Flasse et al., 2013). In contrast with Isl1, mnx1, pcsk1 and ascl1b, we observed lower co-expression levels of neurod1 and pdx1 in ectopic β-cells compared with the pancreatic population in npas4l mutants (Figure 2-figure supplement 1). In addition to the reduction in pancreas size (Figure 1-figure supplement 1), the pdx1-expressing pancreatic duct was also reduced in the npas4l mutant (Figure 2-figure supplement 2), indicating that the pancreas and its duct did not expand to form the ectopic β-cells. These observations together suggest that the pancreatic and ectopic β-cells are similar, yet they are two distinct β-cell populations.
The ectopic β-cells in npas4l mutants and etv2 morphants were of mesodermal origin
We have previously shown that npas4l expression is first initiated in the lateral plate mesoderm at the tailbud stage by in situ hybridization (Reischauer et al., 2016). In this study, we examined npas4l expression at 20 hpf, and found that npas4l was severely reduced in the lateral plate mesoderm in the npas4l mutants (Figure 3-figure supplement 1), whereas normal expression levels were observed in the tailbud and brain. The cells with reduced npas4l expression were still present in the lateral plate mesoderm as demonstrated by the embryos incubated overnight to further develop the npas4l expression signal (Figure 3-figure supplement 1B’). Because the ectopic β-cells induced by the npas4l mutation also resided in the mesenchymal region, and npas4l can act cell-autonomously to affect the hematopoietic and endothelial lineages (Parker & Stainier, 1999), we hypothesized that the ectopic β-cells originated from a mesodermal lineage.
To determine whether the mesoderm was the origin of the ectopic β-cells, we genetically traced the mesodermal cells using drl:CreERT2, a tamoxifen-inducible Cre transgene driven by a drl promoter (Mosimann et al., 2015). The spatial expression pattern of drl in the npas4l mutants resembled that in the sibling controls (Figure 3-figure supplement 2), suggesting that npas4l mutation did not induce any ectopic expression of drl to disrupt the lineage-tracing approach. Together with ubb:loxP-EGFP-STOP-loxP-mCherry (ubi:Switch) (Mosimann et al., 2011), the drl-expressing mesodermal cells would be labelled in red in Tg(drl:CreERT2);Tg(ubi:Switch);Tg(ins:Flag-NTR) (drl-tracing) zebrafish larvae after 4-hydroxytamoxifen (4-OHT) induction (Figure 3A). We treated the transgenic embryos with 4-OHT at 10-12 hours postfertilization (hpf). We chose to label the mesodermal cells during this period as neither endothelial/hematopoietic cells nor β-cells have developed at that stage, i.e. to exclude confounding effects of endothelial/hematopoietic cells or possible ectopic expression of the lineage tracer in the β-cells of the npas4l mutant. To ablate the β-cells, we incubated the 4-OHT-treated transgenic embryos in MTZ at 1-2 days postfertilization (dpf). We allowed the β-cells to regenerate for 30 hours before we fixed the larvae at 3 dpf for immunostaining (Figure 3B).
Immunostaining against insulin displayed a normal set of β-cells in the pancreas of the drl-tracing larvae with or without npas4l mutation after 30 hours of regeneration (Figures 3C, E and F). In line with the findings shown in Figure 1, the npas4l mutation induced the formation of ectopic β-cells in the mesenchymal region (Figures 3D, G and H). Furthermore, 98.9% of the ectopic β-cells in the mesenchymal region were mCherry-positive (Figures 3H’-H’’’), indicating that they derived from the drl-expressing mesodermal cells.
With a similar setting, we injected the drl-tracing embryos (without any npas4l mutation) with control or etv2 morpholino at one-cell stage. Npas4l is essential for the expression of etv2, which is a key regulator of endothelial cell specification and vasculogenesis (Reischauer et al., 2016; Sumanas & Lin, 2006). Similar to npas4l mutation, knocking down etv2 led to the formation of ectopic β-cells (Figures 3I-L’’’). The majority of the ectopic β-cells (94.3%) in etv2 morphants was also lineage-traced back to the drl-expressing mesodermal cells, suggesting that the ectopic β-cell formation was also of mesodermal origin following etv2 knockdown.
The ectopic β-cells in etv2 morphants derived from the etv2-expressing mesodermal lineage
To confirm the origin of the ectopic β-cell using a different lineage-tracing approach we generated Tg(etv2:iCre) zebrafish, which we then crossed into Tg(ubi:Switch);Tg(ins:Flag-NTR), labelling etv2-expressing mesodermal and endothelial cells in red (Figure 4A). At the one-cell stage, we injected the etv2-tracing embryos with control or etv2 morpholinos. After β-cell ablation by MTZ treatment at 1-2 dpf and β-cell regeneration for 30 hours ectopic β-cells formed in the etv2 morphants, and 73.9% of the ectopic β-cells were labelled in red (Figures 4B-E’’’), illustrating that the etv2-expressing lineage gave rise to a significant portion of the ectopic β-cells.
Moreover, we replaced ubi:Switch with ins:loxP-mCherry-STOP-loxP-H2B-GFP (ins:CSH) in the etv2-tracing zebrafish larvae to directly trace insulin-expressing cells originating from the etv2-expressing mesodermal lineage (Figure 4F). The co-localisation of insulin staining and the nuclear green tracer further confirms the mesodermal lineage of the ectopic β-cells (Figures 4G-G’’’).
Together, we used several different lineage-tracing models as well as two different loss of function models, i.e. using either the promoter of drl or etv2 to drive Cre in either naps4l mutants or etv2 morphants. This suggests that the ectopic β-cell formation is not restricted to the loss of a specific gene, but rather due to the absence of endothelial specification.
Discussion
In this study, we first examined the role of blood vessels in β-cell regeneration in the cloche zebrafish mutant, which carries a homozygous npas4l mutation (Reischauer et al., 2016). We then unexpectedly revealed β-cells regenerating ectopically in the mesenchymal area. The ectopic β-cells were likely functional because they expressed several endocrine and β-cell markers including Isl1, mnx1 and pcsk1, and were capable of restoring glucose levels during β-cell regeneration, although we do not know if they possess all the features of bona fide β-cells. Via in situ hybridization, lineage tracing and confocal microscopy, we successfully traced the origin of the ectopic β-cells to the mesodermal lineage. A recent study has reported the conversion of Etv2-deficient vascular progenitors into skeletal muscle cells, and highlighted the plasticity of mesodermal cell fate determination within the same germ layer (Chestnut et al., 2020). Our data demonstrated the plasticity of β-cell differentiation across the committed germ layers in vivo, i.e., switching from a mesodermal to an endodermal fate in a regenerative setting, while gastrulation and cell fate commitment in the germ layers are considered to be irreversible in development. Ectopic pancreata have been observed before, e.g. in Hes1 mutant mice (Fukuda et al., 2006; Sumazaki et al., 2004), although that has been shown to be through an expansion of the pancreas rather than through changes in cell fate determination across organs or germ layers (Jorgensen et al., 2018). Our discovery is, to our knowledge, the first demonstration of ectopic β-cells with a mesodermal origin in vivo.
The mutated gene in the cloche mutant was named npas4l because its protein shares some homology with human NPAS4 (Reischauer et al., 2016). Although injecting either human NPAS4 mRNA or zebrafish npas4l mRNA into zebrafish cloche mutant embryos at the one-cell stage could rescue the mutants, Npas4 knockout mice are unlikely to share the same severe vascular and hematopoietic defects as zebrafish npas4l mutants because Npas4 knockout mice survive to adulthood (Lin et al., 2008). This discrepancy suggests that other members of the mammalian NPAS protein family or other proteins may be functionally redundant with NPAS4 in vascular and hematopoietic development. Mammalian NPAS4 has been shown to have important cell-autonomous functions in β-cells (Sabatini et al., 2018; Speckmann et al., 2016). In zebrafish, npas4a is the main npas4 paralog expressed in β-cells (Tarifeno-Saldivia et al., 2017), meaning that it is unlikely the phenotype we identified early in development in npas4l mutants is related to the functions of Npas4 in β-cells. Further studies on NPAS4, related bHLH transcription factors and ETV2 in mammals would elucidate whether inactivating such factors promotes β-cell formation with or without significantly perturbing the development of blood cells and vessels. We have shown that the enhanced differentiation potential in npas4l mutants is not limited to β-cell regeneration, which indicates that Npas4l may act as a gate for endodermal pancreatic cell fates in the mesoderm. Opening this gate in mesodermal cells may convert them to endodermal cells.
In summary, we have shown that the npas4l mutation or etv2 knockdown induces ectopic regeneration of functional β-cells from the mesoderm. Our findings suggest a plasticity-potential of the mesodermal cells to differentiate into β-cells and other endodermal pancreatic cells (Figure 4-figure supplement 1). Further studies on the restriction of this plasticity would not only increase our understanding of the gating role of Npas4l and Etv2 in cell fate determination but also help to exploit an alternative source for β-cell regeneration.
Methods
Zebrafish
The following previously published mutant or transgenic zebrafish (Danio rerio) lines were used: clocheS5 (Field et al., 2003) as the npas4l mutant, Tg(ins:Hsa.HIST1H2BJ-GFP;ins:DsRed)s960 (Tsuji et al., 2014) abbreviated as Tg(ins:H2BGFP;ins:DsRed), Tg(ins:Flag-NTR)s950 (Andersson et al., 2012), Tg(ptf1a:GFP)jh1 (Godinho et al., 2005), Tg(hand2:EGFP)pd24 (Kikuchi et al., 2011), TgBAC(neurod1:EGFP)nl1 (Obholzer et al., 2008), Tg(−6.5pdx1:GFP)zf6 (Huang et al., 2001), Tg(mnx1:GFP)ml2 (Flanagan-Steet et al., 2005), Tg(pcsk1:eGFP)KI106 (Lu et al., 2016), TgBAC(ascl1b:EGFP-2A-Cre-ERT2)ulg006Tg (Ghaye et al., 2015) abbreviated as Tg(ascl1b:GFP), Tg(−3.5ubb:loxP-EGFP-loxP-mCherry)cz1701 (Mosimann et al., 2011) abbreviated as Tg(ubi:Switch), Tg(−6.35drl:Cre-ERT2,cryaa:Venus)cz3333 (Mosimann et al., 2015) abbreviated as Tg(drl:CreERT2) (a generous gift from Christian Mosimann), Tg(sst2:NTR,cryaa:Cerulean)KI102 (Lu et al., 2016) abbreviated as Tg(sst2:NTR), Tg(sst2:RFP)gz19 (Li et al., 2009) and Tg(insulin:loxP-mCherry-STOP-loxP-H2B-GFP; cryaa:Cerulean)s934 (Hesselson et al., 2011), which is referred to Tg(ins:mCherry) in Figure 2 and Tg(ins:CSH) in Figure 4.
The Tg(etv2:iCre;cryaa:Venus)KI114 line was generated by the Tol2 transposon system and the construct was made by MultiSite Gateway Cloning (Invitrogen). The amplicon of the-2.3etv2 promoter was synthesised from zebrafish genomic DNA with a forward primer 5’- TATAGGGCGAATTGggtaccTTCAGTAAGCAGACTCCTTCAATCA -3’ and a reverse primer 5’- AGCTGGAGCTCCAccgcggTTCGGCATACTGCTGTTGGAC -3’ by Phusion High-Fidelity DNA Polymerase (Thermo Scientific) as an insert for In-Fusion Cloning (Takara Bio) with p5E-MCS using restriction sites KpnI and SacII to yield p5E-etv2. Subsequently p5E-etv2, pME-iCre and p3E-polyA were used for the LR reaction with the destination vector to generate the construct etv2:iCre.
Males and females ranging in age from 3 months to 2 years were used for breeding to obtain new offspring for experiments. Individuals were sorted into the control sibling group (npas4l+/+ or npas4l+/−) and the homozygous npas4l mutant group (npas4l−/−) based on the characteristic pericardial oedema and blood-cell deficit. Zebrafish larvae were allocated into different experimental groups based on their phenotypes and genotypes in experiments involving cloche mutants. In morpholino knockdown experiments, zebrafish embryos were randomly assigned to each experimental condition for injection. Experimental procedures were performed on the zebrafish from 10 hpf to 3 dpf before the completion of sex determination and gonad differentiation. All zebrafish, except homozygous npas4l mutants and etv2 morphants, appeared healthy and survived to adulthood. The homozygous npas4l mutants exhibited pericardial oedema, bell-shaped hearts and blood deficits, as previously reported (Stainier et al., 1995).The etv2 morphants had similar phenotypes. All studies involving zebrafish were performed in accordance with local guidelines and regulations, and approved by regional authorities.
Chemical ablation of β- and δ-cells
As in our previous report (Schulz et al., 2016), we ablated β-cells and δ-cells by incubating the β-cell ablation model Tg(ins:Flag-NTR) zebrafish and the δ-cell ablation model Tg(sst2:NTR) zebrafish in E3 medium supplemented with 10 mM metronidazole (MTZ, Sigma-Aldrich), 1% DMSO (VWR) and 0.2 mM 1-phenyl-2-thiourea (Acros Organics) for 24 h from 1 to 2 dpf.
Microinjection of morpholinos
Standard control morpholino (5’-CCTCTTACCTCAGTTACAATTTATA-3’) and etv2 morpholino (5’-CACTGAGTCCTTATTTCACTATATC-3’) (Sumanas & Lin, 2006) were purchased from Gene Tools, LLC and 4ng of each was injected into one-cell stage zebrafish embryos.
Lineage tracing by tamoxifen-inducible Cre recombinase
To genetically trace the mesodermal lineage, we treated Tg(ins:Flag-NTR);Tg(ubi:Switch);Tg(drl:CreERT2) zebrafish embryos with 10 μM 4-OHT (Sigma-Aldrich) in E3 medium in 90-mm Petri dishes, with approximately 60 individuals per dish, from 10 to 12 hpf. Upon induction by 4-OHT, cytoplasmic CreERT2 would be translocated to the nucleus to excise the loxP-flanked EGFP to enable mCherry expression in drl-expressing cells and their descendants, indicating a mesodermal lineage.
Sample fixation for immunostaining
Before fixing the zebrafish larvae, we confirmed the presence of the transgenes by determining the corresponding fluorescent markers and subsequently examined them under a widefield fluorescence microscope LEICA M165 FC (Leica Microsystems). We then euthanized the zebrafish larvae with 250 mg/L tricaine (Sigma-Aldrich) in E3 medium followed by washing in distilled water three times. We fixed the samples in 4% formaldehyde (Sigma-Aldrich) in PBS (ThermoFisher Scientific) at 4 °C overnight. After washing away the fixative with PBS three times, we removed the skin and crystallized yolk of the zebrafish larvae by forceps under the microscope to expose the pancreas and mesenchyme for immunostaining.
Immunostaining and confocal imaging
As in our previous report (Liu et al., 2018), we started immunostaining by incubating the zebrafish samples in blocking solution (0.3% Triton X-100, 4% BSA and 0.02% sodium azide from Sigma-Aldrich in PBS) at room temperature for one hour. We then incubated the samples in blocking solution with primary antibodies at 4 °C overnight. After removing the primary antibodies, we washed the samples with washing buffer (0.3% Triton X-100 in PBS) eight times at room temperature for two hours. Afterwards, we incubated the samples in blocking solution with fluorescent dye-conjugated secondary antibodies and the nuclear counterstain DAPI (ThermoFisher Scientific) if applicable at 4 °C overnight. Next, we removed the secondary antibodies and nuclear counterstain and washed the samples with washing buffer eight times at room temperature for two hours. The following primary antibodies were used: anti-GFP (1:500, Aves Labs, GFP-1020), anti-RFP (1:500, Abcam, ab62341), anti-insulin (1:100, Cambridge Research Biochemicals, customised), anti-pan-cadherin (1:5000, Sigma, C3678) and anti-islet-1-homeobox (1:10, DSHB, 40.3A4 supernatant).
Before confocal imaging, we mounted the stained samples in VECTASHIELD Antifade Mounting Medium (Vector Laboratories) on microscope slides with the pancreas facing the cover slips. We imaged the pancreas and the neighbouring mesenchyme of every zebrafish sample that we had mounted with the confocal laser scanning microscopy platform Leica TCS SP8 (Leica Microsystems).
Determination of free glucose level in zebrafish
To collect the samples, we washed the zebrafish larvae in PBS and transferred them to individual tubes, with 5 larvae per tube, for snap freezing in liquid nitrogen. Afterwards, we added a 5-mm stainless steel bead (QIAGEN) and 100 μl of PBS to each tube and lysed the samples by TissueLyser II (QIAGEN) at 4 °C for 2 min. After centrifugation, we transferred the supernatant to another tube for further analysis.
We employed the Glucose Colorimetric/Fluorometric Assay Kit (BioVision) to measure the free glucose level in the zebrafish larvae according to the manufacturer’s protocol. First, we prepared a glucose standard at 0, 0.1, 0.2, 0.4 and 0.8 nmol in 25 μl of glucose assay buffer in a 96-well microplate for the standard curve. We then transferred 5 μl of the sample supernatant from each sample tube together with 20 μl of glucose assay buffer to the microplate. Subsequently, we prepared the glucose reaction mix consisting of 24.8 μl of glucose assay buffer, 0.1 μl of glucose probe and 0.1 μl of glucose enzyme mix for each reaction. After adding 25 μl of glucose reaction mix to each reaction, we incubated the microplate at 37 °C in the dark for 30 min. Finally, we measured the fluorescence intensity emitted from the reactions with the FLUOstar OPTIMA microplate reader (BMG LABTECH) at Ex/Em = 535/590 nm.
Whole-mount in situ hybridization
Zebrafish embryos at 10 and 20 dpf were fixed with 4% paraformaldehyde in PBS at 4 °C overnight. Whole-mount in situ hybridization was performed according to the method in a previous report (Thisse & Thisse, 2008). Probes against npas4l and drl were synthesised from PCR-products using bud-stage zebrafish cDNA, Phusion High-Fidelity DNA Polymerase (Thermo Scientific) and primer pairs 5’- ACTCGGGCATCAGGAGGATC-3’ plus 5’- (CCTAATACGACTCACTATAGGG)GACACCAGCATACGACACACAAC-3’ for npas4l, and 5’- ATGAAGAATACAACAAAACCC-3’ plus 5’- (CCTAATACGACTCACTATAGGG)TGAGAAGCTCTGGCCGC-3’ for drl, respectively, T7 was employed for transcription, and digoxigenin (Roche) was used for labelling. To genotype the npas4l mutants, PCR was performed using gDNA from the imaged samples and primers 5’- TTCCATCTTCTGAATCCTCCA-3’ plus 5’- GGACAGACCCAGATACTCGT-3’ at the conditions previously reported (Reischauer et al., 2016). The PCR products were then sent for sequencing with a primer 5’- TTTCTGCCGTGAATGGATGTG-3’ (Eurofins Genomics).
Statistical analysis
Similar experiments were performed at least two times independently. The number of cells in the confocal microscopy images were all quantified manually with the aid of the Multipoint Tool from ImageJ. Data were then analysed with Prism (GraphPad). Statistical analyses were carried out by two-tailed t-tests when two groups were analysed and by ANOVA when more than two groups were analysed. We have presented the results as the mean values ± SEM and considered P values ≤ 0.05 to be statistically significant. The n number represents the number of zebrafish individuals in each group of each experiment.
Competing interests
The authors declare no competing interests.
Figure Supplements Legends
Acknowledgments
Research in the lab of O.A. was supported by funding from the European Research Council under the Horizon 2020 research and innovation programme (grant n° 772365); the Swedish Research Council; the Novo Nordisk Foundation; Ragnar Söderberg’s Foundation; and the Strategic Research Programmes in Diabetes, and Stem Cells & Regenerative Medicine at the Karolinska Institutet. This work was also supported by an EFSD/Lilly Fellowship awarded to K.C.L.