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Reciprocalspaceship: A Python Library for Crystallographic Data Analysis

View ORCID ProfileJack B. Greisman, View ORCID ProfileKevin M. Dalton, View ORCID ProfileDoeke R. Hekstra
doi: https://doi.org/10.1101/2021.02.03.429617
Jack B. Greisman
1Department of Molecular & Cellular Biology, Harvard University, Cambridge, MA 02138,
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  • For correspondence: greisman@g.harvard.edu
Kevin M. Dalton
2Department of Molecular & Cellular Biology, Harvard University, Cambridge, MA 02138,
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  • For correspondence: kmdalton@fas.harvard.edu
Doeke R. Hekstra
3Department of Molecular & Cellular Biology, John A. paulson school of Engineering and Applied sciences, Harvard University, Cambridge, MA 02138,
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  • For correspondence: doeke_hekstra@harvard.edu doeke_hekstra@harvard.edu
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Abstract

X-ray crystallography is an invaluable technique for studying the atomic structure of macromolecules. Much of crystallography’s success is due to the software packages developed to enable the automated processing of diffraction data. However, the analysis of unconventional diffraction experiments can still pose significant challenges—many existing programs are closed-source, sparsely documented, or are challenging to integrate with modern libraries for scientific computing and machine learning. Here we describe reciprocalspaceship, a Python library for exploring reciprocal space. It provides a tabular representation for reflection data from diffraction experiments that extends the widely-used pandas library with built-in methods for handling space group, unit cell, and symmetry-based operations. As we illustrate, this library facilitates new modes of exploratory data analysis while supporting the prototyping, development, and release of new methods.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/Hekstra-Lab/reciprocalspaceship

  • http://doi.org/10.5281/zenodo.4426679

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted February 04, 2021.
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Reciprocalspaceship: A Python Library for Crystallographic Data Analysis
Jack B. Greisman, Kevin M. Dalton, Doeke R. Hekstra
bioRxiv 2021.02.03.429617; doi: https://doi.org/10.1101/2021.02.03.429617
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Reciprocalspaceship: A Python Library for Crystallographic Data Analysis
Jack B. Greisman, Kevin M. Dalton, Doeke R. Hekstra
bioRxiv 2021.02.03.429617; doi: https://doi.org/10.1101/2021.02.03.429617

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