Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Cutevariant: a GUI-based desktop application to explore genetics variations

View ORCID ProfileSacha Schutz, View ORCID ProfilePierre Marijon, View ORCID ProfileTristan Montier, View ORCID ProfileEmmanuelle Genin
doi: https://doi.org/10.1101/2021.02.10.430619
Sacha Schutz
1Univ Brest, CHRU Brest, Inserm, EFS, UMR 1078, GGB, 29200, Brest, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sacha Schutz
  • For correspondence: sacha@labsquare.org
Pierre Marijon
2Heinrich Heine University Düsseldorf, Medical Faculty, Institute for Medical Biometry and Bioinformatics, 40225, Düsseldorf, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Pierre Marijon
Tristan Montier
1Univ Brest, CHRU Brest, Inserm, EFS, UMR 1078, GGB, 29200, Brest, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Tristan Montier
Emmanuelle Genin
1Univ Brest, CHRU Brest, Inserm, EFS, UMR 1078, GGB, 29200, Brest, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Emmanuelle Genin
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

Cutevariant is a user-friendly GUI based desktop application for genomic research designed to search for variations in DNA samples collected in annotated files and encoded in the Variant Calling Format. The application imports data into a local relational database wherefrom complex filter-queries can be built either from the intuitive GUI or using a Domain Specific Language (DSL). Cutevariant provides more features than any existing applications without compromising on performance. The plugin based architecture provides highly customizable features. Cutevariant is distributed as a multiplatform client-side software under an open source licence and is available at https://github.com/labsquare/Cutevariant. It has been designed from the beginning to be easily adopted by IT-agnostic end-users.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://labsquare.github.io/cutevariant/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted February 15, 2021.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Cutevariant: a GUI-based desktop application to explore genetics variations
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Cutevariant: a GUI-based desktop application to explore genetics variations
Sacha Schutz, Pierre Marijon, Tristan Montier, Emmanuelle Genin
bioRxiv 2021.02.10.430619; doi: https://doi.org/10.1101/2021.02.10.430619
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Cutevariant: a GUI-based desktop application to explore genetics variations
Sacha Schutz, Pierre Marijon, Tristan Montier, Emmanuelle Genin
bioRxiv 2021.02.10.430619; doi: https://doi.org/10.1101/2021.02.10.430619

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3686)
  • Biochemistry (7767)
  • Bioengineering (5666)
  • Bioinformatics (21235)
  • Biophysics (10553)
  • Cancer Biology (8158)
  • Cell Biology (11902)
  • Clinical Trials (138)
  • Developmental Biology (6737)
  • Ecology (10387)
  • Epidemiology (2065)
  • Evolutionary Biology (13838)
  • Genetics (9694)
  • Genomics (13054)
  • Immunology (8120)
  • Microbiology (19934)
  • Molecular Biology (7824)
  • Neuroscience (42958)
  • Paleontology (318)
  • Pathology (1276)
  • Pharmacology and Toxicology (2256)
  • Physiology (3350)
  • Plant Biology (7207)
  • Scientific Communication and Education (1309)
  • Synthetic Biology (1998)
  • Systems Biology (5528)
  • Zoology (1126)