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A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection

View ORCID ProfileHejun Liu, View ORCID ProfileMeng Yuan, View ORCID ProfileDeli Huang, View ORCID ProfileSandhya Bangaru, View ORCID ProfileChang-Chun D. Lee, View ORCID ProfileLinghang Peng, View ORCID ProfileXueyong Zhu, View ORCID ProfileDavid Nemazee, View ORCID ProfileMarit J. van Gils, View ORCID ProfileRogier W. Sanders, Hans-Christian Kornau, View ORCID ProfileS. Momsen Reincke, View ORCID ProfileHarald Prüss, View ORCID ProfileJakob Kreye, View ORCID ProfileNicholas C. Wu, View ORCID ProfileAndrew B. Ward, View ORCID ProfileIan A. Wilson
doi: https://doi.org/10.1101/2021.02.11.430866
Hejun Liu
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Meng Yuan
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Deli Huang
2Department of Immunology and Microbiology and Infection Prevention, The Scripps Research Institute, La Jolla, CA 92037, USA
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Sandhya Bangaru
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Chang-Chun D. Lee
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Linghang Peng
2Department of Immunology and Microbiology and Infection Prevention, The Scripps Research Institute, La Jolla, CA 92037, USA
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Xueyong Zhu
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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David Nemazee
2Department of Immunology and Microbiology and Infection Prevention, The Scripps Research Institute, La Jolla, CA 92037, USA
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Marit J. van Gils
3Department of Medical Microbiology, Amsterdam University Medical Centers, Location AMC, University of Amsterdam, Amsterdam, The Netherlands
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Rogier W. Sanders
3Department of Medical Microbiology, Amsterdam University Medical Centers, Location AMC, University of Amsterdam, Amsterdam, The Netherlands
4Department of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY 10021, USA
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Hans-Christian Kornau
5German Center for Neurodegenerative Diseases (DZNE) Berlin, Berlin, Germany
6Neuroscience Research Center (NWFZ), Cluster NeuroCure, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität Berlin, and Berlin Institute of Health, Berlin, Germany
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S. Momsen Reincke
5German Center for Neurodegenerative Diseases (DZNE) Berlin, Berlin, Germany
7Helmholtz Innovation Lab BaoBab, Berlin, Germany
8Department of Neurology and Experimental Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität Berlin, and Berlin Institute of Health, Berlin, Germany
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Harald Prüss
5German Center for Neurodegenerative Diseases (DZNE) Berlin, Berlin, Germany
7Helmholtz Innovation Lab BaoBab, Berlin, Germany
8Department of Neurology and Experimental Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität Berlin, and Berlin Institute of Health, Berlin, Germany
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Jakob Kreye
5German Center for Neurodegenerative Diseases (DZNE) Berlin, Berlin, Germany
7Helmholtz Innovation Lab BaoBab, Berlin, Germany
8Department of Neurology and Experimental Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität Berlin, and Berlin Institute of Health, Berlin, Germany
9Department of Pediatric Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität Berlin, and Berlin Institute of Health, Berlin, Germany
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Nicholas C. Wu
10Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
11Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
12Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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Andrew B. Ward
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Ian A. Wilson
1Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
13The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA
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  • For correspondence: wilson@scripps.edu
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ABSTRACT

Coronaviruses have caused several epidemics and pandemics including the ongoing coronavirus disease 2019 (COVID-19). Some prophylactic vaccines and therapeutic antibodies have already showed striking effectiveness against COVID-19. Nevertheless, concerns remain about antigenic drift in SARS-CoV-2 as well as threats from other sarbecoviruses. Cross-neutralizing antibodies to SARS-related viruses provide opportunities to address such concerns. Here, we report on crystal structures of a cross-neutralizing antibody CV38-142 in complex with the receptor binding domains from SARS-CoV-2 and SARS-CoV. Our structural findings provide mechanistic insights into how this antibody can accommodate antigenic variation in these viruses. CV38-142 synergizes with other cross-neutralizing antibodies, in particular COVA1-16, to enhance neutralization of SARS-CoV-2 and SARS-CoV. Overall, this study provides valuable information for vaccine and therapeutic design to address current and future antigenic drift in SARS-CoV-2 and to protect against zoonotic coronaviruses.

Competing Interest Statement

A patent application for SARS-CoV-2 antibody CV38-142 was first disclosed in (Kreye et al, 2020) and filed under application number 20182069.3 by some of the authors at Neurodegenerative Diseases (DZNE) and Charite-Universitatsmedizin Berlin. The Amsterdam UMC filed a patent on SARS-CoV-2 antibodies including COVA1-16 under application number 2020-039EP-PR that included the AMC authors on this paper.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted February 12, 2021.
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A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection
Hejun Liu, Meng Yuan, Deli Huang, Sandhya Bangaru, Chang-Chun D. Lee, Linghang Peng, Xueyong Zhu, David Nemazee, Marit J. van Gils, Rogier W. Sanders, Hans-Christian Kornau, S. Momsen Reincke, Harald Prüss, Jakob Kreye, Nicholas C. Wu, Andrew B. Ward, Ian A. Wilson
bioRxiv 2021.02.11.430866; doi: https://doi.org/10.1101/2021.02.11.430866
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A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection
Hejun Liu, Meng Yuan, Deli Huang, Sandhya Bangaru, Chang-Chun D. Lee, Linghang Peng, Xueyong Zhu, David Nemazee, Marit J. van Gils, Rogier W. Sanders, Hans-Christian Kornau, S. Momsen Reincke, Harald Prüss, Jakob Kreye, Nicholas C. Wu, Andrew B. Ward, Ian A. Wilson
bioRxiv 2021.02.11.430866; doi: https://doi.org/10.1101/2021.02.11.430866

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