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Integument transcriptome profile of the European sea cucumber Holothuria forskali (Holothuroidea, Echinodermata)

View ORCID ProfileJérôme Delroisse, Marie Bonneel, Mélanie Demeuldre, Igor Eeckhaut, Patrick Flammang
doi: https://doi.org/10.1101/2021.02.12.430961
Jérôme Delroisse
University of Mons - UMONS, Research Institute for Biosciences, Biology of Marine Organisms and Biomimetics Unit, 23 Place du Parc, 7000 Mons – Belgium
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  • ORCID record for Jérôme Delroisse
  • For correspondence: Jerome.Delroisse@umons.ac.be Patrick.Flammang@umons.ac.be
Marie Bonneel
University of Mons - UMONS, Research Institute for Biosciences, Biology of Marine Organisms and Biomimetics Unit, 23 Place du Parc, 7000 Mons – Belgium
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Mélanie Demeuldre
University of Mons - UMONS, Research Institute for Biosciences, Biology of Marine Organisms and Biomimetics Unit, 23 Place du Parc, 7000 Mons – Belgium
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Igor Eeckhaut
University of Mons - UMONS, Research Institute for Biosciences, Biology of Marine Organisms and Biomimetics Unit, 23 Place du Parc, 7000 Mons – Belgium
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Patrick Flammang
University of Mons - UMONS, Research Institute for Biosciences, Biology of Marine Organisms and Biomimetics Unit, 23 Place du Parc, 7000 Mons – Belgium
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  • For correspondence: Jerome.Delroisse@umons.ac.be Patrick.Flammang@umons.ac.be
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Abstract

In non-model organisms, Next Generation Sequencing (NGS) technology improve our ability to analyze gene expression and identify new genes or transcripts of interest. In this research, paired-end Illumina HiSeq sequencing has been used to describe a composite transcriptome based on two libraries generated from dorsal and ventral integuments of the European sea cucumber Holothuria forskali (Holothuroidea, Echinodermata). A total of 43,044,977 million HQ reads were initially generated. After de novo assembly, a total of 111,194 unigenes were predicted. On all predicted unigenes, 32,569 show significant matches with genes/proteins present in the reference databases. Around 50% of annotated unigenes were significantly similar to sequences from the purple sea urchin Strongylocentrotus purpuratus genome. Annotation analyses were performed on predicted unigenes using public reference databases. These RNA-seq data provide an interesting resource for researchers with a broad interest in sea cucumber biology.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Jerome.Delroisse{at}umons.ac.be, Marie.Bonneel{at}umons.ac.be, Melanie.Demeuldre{at}gmail.com, Igor.Eeckhaut{at}umons.ac.be, Patrick.Flammang{at}umons.ac.be

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Posted February 14, 2021.
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Integument transcriptome profile of the European sea cucumber Holothuria forskali (Holothuroidea, Echinodermata)
Jérôme Delroisse, Marie Bonneel, Mélanie Demeuldre, Igor Eeckhaut, Patrick Flammang
bioRxiv 2021.02.12.430961; doi: https://doi.org/10.1101/2021.02.12.430961
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Integument transcriptome profile of the European sea cucumber Holothuria forskali (Holothuroidea, Echinodermata)
Jérôme Delroisse, Marie Bonneel, Mélanie Demeuldre, Igor Eeckhaut, Patrick Flammang
bioRxiv 2021.02.12.430961; doi: https://doi.org/10.1101/2021.02.12.430961

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