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Enzyme engineering and in vivo testing of a formate-reduction pathway

View ORCID ProfileJue Wang, Karl Anderson, Ellen Yang, Lian He, Mary E. Lidstrom
doi: https://doi.org/10.1101/2021.02.15.431286
Jue Wang
1Department of Chemical Engineering, University of Washington, USA
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Karl Anderson
1Department of Chemical Engineering, University of Washington, USA
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Ellen Yang
1Department of Chemical Engineering, University of Washington, USA
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Lian He
1Department of Chemical Engineering, University of Washington, USA
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Mary E. Lidstrom
1Department of Chemical Engineering, University of Washington, USA
2Department of Microbiology, University of Washington, USA
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  • For correspondence: jue@uw.edu
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Abstract

Formate is an attractive feedstock for sustainable microbial production of fuels and chemicals, but its potential is limited by the lack of efficient assimilation pathways. The reduction of formate to formaldehyde would allow efficient downstream assimilation, but no efficient enzymes are known for this transformation. To develop a 2-step formate-reduction pathway, we screened natural variants of acyl-CoA synthetase (ACS) and acylating aldehyde dehydrogenase (ACDH) for activity on one-carbon substrates and identified active and highly expressed homologs of both enzymes. We then performed directed evolution, increasing ACDH specific activity by 2.5-fold and ACS lysate activity by 5-fold. To test for in vivo activity of our pathway, we expressed it in a methylotroph which can natively assimilate formaldehyde. Although the enzymes were active in cell extracts, we could not detect formate assimilation into biomass, indicating that further improvement will be required for formatotrophy. Our work provides a foundation for further development of a versatile pathway for formate assimilation.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The author list was corrected. No other changes have been made.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 16, 2021.
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Enzyme engineering and in vivo testing of a formate-reduction pathway
Jue Wang, Karl Anderson, Ellen Yang, Lian He, Mary E. Lidstrom
bioRxiv 2021.02.15.431286; doi: https://doi.org/10.1101/2021.02.15.431286
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Enzyme engineering and in vivo testing of a formate-reduction pathway
Jue Wang, Karl Anderson, Ellen Yang, Lian He, Mary E. Lidstrom
bioRxiv 2021.02.15.431286; doi: https://doi.org/10.1101/2021.02.15.431286

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