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TGF-β signaling suppresses TCA cycle metabolism in renal cancer

View ORCID ProfileHyeyoung Nam, View ORCID ProfileAnirban Kundu, Suman Karki, View ORCID ProfileGarrett Brinkley, View ORCID ProfileDarshan S. Chandrashekar, View ORCID ProfileRichard L. Kirkman, Juan Liu, Maria V. Liberti, View ORCID ProfileJason W. Locasale, View ORCID ProfileTanecia Mitchell, Sooryanarayana Varambally, Sunil Sudarshan
doi: https://doi.org/10.1101/2021.02.19.429599
Hyeyoung Nam
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Anirban Kundu
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Suman Karki
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Garrett Brinkley
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Darshan S. Chandrashekar
2Pathology University of Alabama at Birmingham, Birmingham, AL, 35294
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Richard L. Kirkman
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Juan Liu
3Department of Pharmacology and Cancer Biology, Duke University, Durham, NC 27710
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Maria V. Liberti
3Department of Pharmacology and Cancer Biology, Duke University, Durham, NC 27710
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Jason W. Locasale
3Department of Pharmacology and Cancer Biology, Duke University, Durham, NC 27710
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Tanecia Mitchell
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
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Sooryanarayana Varambally
2Pathology University of Alabama at Birmingham, Birmingham, AL, 35294
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Sunil Sudarshan
1Departments of Urology, University of Alabama at Birmingham, Birmingham, AL, 35294
4Birmingham Veterans Affairs Medical Center, Birmingham, AL, 35233
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  • For correspondence: ssudarshan@uabmc.edu
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ABSTRACT

The Warburg effect is one of most-well studied metabolic phenomenon in cancer cells. For the most part, these studies have focused on enhanced rates of glycolysis observed in various models. The presumption has been that mitochondrial metabolism is suppressed. However, recent studies indicate that the extent of mitochondrial metabolism is far more heterogeneous in tumors than originally presumed. One tumor type with suppression of mitochondrial metabolism is renal cell carcinoma (RCC). Prior studies indicate that suppressed TCA cycle enzyme mRNA expression is associated with aggressive RCC. Yet, the mechanisms that regulate the TCA cycle in RCC remain uncharacterized. Here, we demonstrate that loss of TCA cycle enzyme expression is retained in RCC metastatic tissues. Moreover, proteomic analysis demonstrates that reduced TCA cycle enzyme expression is far more pronounced in RCC relative to other tumor types. Loss of TCA cycle enzyme expression is correlated with reduced expression of the transcription factor peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) which is also lost in RCC tissues. PGC-1α re-expression in RCC cells restores the expression of TCA cycle enzymes in vitro and in vivo and leads to enhanced glucose carbon incorporation into TCA cycle intermediates. Mechanistically, TGF-β signaling, in concert with histone deacetylase 7 (HDAC7), suppresses TCA cycle enzyme expression. In turn, pharmacologic inhibition of TGF-β restores expression of TCA cycle enzyme expression and suppresses tumor growth in an orthotopic model of RCC. Taken together, our findings reveal a novel role for the TGF-β /HDAC7 axis in global suppression of TCA cycle enzymes in RCC and provide novel insight into the molecular basis of altered mitochondrial metabolism in this malignancy.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Currently at Rockerfeller University

  • We certify that there is no conflict of interest with any financial organization regarding the material described in this manuscript.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted February 19, 2021.
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TGF-β signaling suppresses TCA cycle metabolism in renal cancer
Hyeyoung Nam, Anirban Kundu, Suman Karki, Garrett Brinkley, Darshan S. Chandrashekar, Richard L. Kirkman, Juan Liu, Maria V. Liberti, Jason W. Locasale, Tanecia Mitchell, Sooryanarayana Varambally, Sunil Sudarshan
bioRxiv 2021.02.19.429599; doi: https://doi.org/10.1101/2021.02.19.429599
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TGF-β signaling suppresses TCA cycle metabolism in renal cancer
Hyeyoung Nam, Anirban Kundu, Suman Karki, Garrett Brinkley, Darshan S. Chandrashekar, Richard L. Kirkman, Juan Liu, Maria V. Liberti, Jason W. Locasale, Tanecia Mitchell, Sooryanarayana Varambally, Sunil Sudarshan
bioRxiv 2021.02.19.429599; doi: https://doi.org/10.1101/2021.02.19.429599

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