Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Prediction of nanographene binding-scores to trout cellular receptors and cytochromes

View ORCID ProfileM. C. Connolly, View ORCID ProfileJ.M. Navas, View ORCID ProfileJ. Coll
doi: https://doi.org/10.1101/2021.02.20.432107
M. C. Connolly
Department of Environment. Instituto Nacional de Investigacion y Tecnología Agraria y Alimentaria, INIA. Madrid, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for M. C. Connolly
J.M. Navas
Department of Environment. Instituto Nacional de Investigacion y Tecnología Agraria y Alimentaria, INIA. Madrid, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for J.M. Navas
J. Coll
Department of Environment. Instituto Nacional de Investigacion y Tecnología Agraria y Alimentaria, INIA. Madrid, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for J. Coll
  • For correspondence: juliocollm@gmail.com
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

To address the increasing concerns surrounding possible impacts of graphene-related materials on the aquatic environment, this study focused on computational predictions of binding between models of graphenes in the nm size range (nanographenes, nGs) and the aryl-hydrocarbon receptor (tAHR) and P450 cytochromes (tCYPs) of rainbow trout (Oncorhynchus mykiss). The tAHR plays a key role in the induction of detoxifying and early immune responses and tCYPs are essential for detoxifying planar hydrophobic chemicals such as nGs. After 3D modelling of those trout proteins, docking algorithms predicted the size-dependance profiles of nGs binding-scores to tAHR and tCYPs in the low nM range (high binding-affinities). Virtual oxidations of nGs to nGOs (carboxy-, epoxy-and/or hydroxy-oxidations) further lowered the corresponding binding-scores in level/type-oxidation manners. Among all the tCYPs, the tCYP3AR (the equivalent to human CYP3A4) was identified as a potential key interaction enzyme for nGs because of its lower binding-scores. These results implicate a possible processing pathway to be further probed through in vitro and in vivo experimentation. Together the information generated can be pivotal for the design of safer graphene-related materials for a variety of applications and help to understand their detoxification in aquatic vertebrates.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Back to top
PreviousNext
Posted February 21, 2021.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Prediction of nanographene binding-scores to trout cellular receptors and cytochromes
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Prediction of nanographene binding-scores to trout cellular receptors and cytochromes
M. C. Connolly, J.M. Navas, J. Coll
bioRxiv 2021.02.20.432107; doi: https://doi.org/10.1101/2021.02.20.432107
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
Prediction of nanographene binding-scores to trout cellular receptors and cytochromes
M. C. Connolly, J.M. Navas, J. Coll
bioRxiv 2021.02.20.432107; doi: https://doi.org/10.1101/2021.02.20.432107

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Pharmacology and Toxicology
Subject Areas
All Articles
  • Animal Behavior and Cognition (2546)
  • Biochemistry (4995)
  • Bioengineering (3499)
  • Bioinformatics (15283)
  • Biophysics (6930)
  • Cancer Biology (5431)
  • Cell Biology (7781)
  • Clinical Trials (138)
  • Developmental Biology (4563)
  • Ecology (7182)
  • Epidemiology (2059)
  • Evolutionary Biology (10261)
  • Genetics (7539)
  • Genomics (9833)
  • Immunology (4901)
  • Microbiology (13307)
  • Molecular Biology (5169)
  • Neuroscience (29586)
  • Paleontology (203)
  • Pathology (842)
  • Pharmacology and Toxicology (1470)
  • Physiology (2154)
  • Plant Biology (4786)
  • Scientific Communication and Education (1015)
  • Synthetic Biology (1343)
  • Systems Biology (4024)
  • Zoology (772)