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High-Speed, Cortex-Wide Volumetric Recording of Neuroactivity at Cellular Resolution using Light Beads Microscopy

Jeffrey Demas, Jason Manley, Frank Tejera, Hyewon Kim, Francisca Martínez Traub, Brandon Chen, View ORCID ProfileAlipasha Vaziri
doi: https://doi.org/10.1101/2021.02.21.432164
Jeffrey Demas
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Jason Manley
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Frank Tejera
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Hyewon Kim
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Francisca Martínez Traub
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Brandon Chen
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
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Alipasha Vaziri
1Laboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, New York, USA
2The Kavli Neural Systems Institute, The Rockefeller University, New York, New York, USA
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  • ORCID record for Alipasha Vaziri
  • For correspondence: vaziri@rockefeller.edu
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Abstract

Two-photon microscopy together with genetically encodable calcium indicators has emerged as a standard tool for high-resolution imaging of neuroactivity in scattering brain tissue. However, its various realizations have not overcome the inherent tradeoffs between speed and spatiotemporal sampling in a principled manner which would be necessary to enable, amongst other applications, mesoscale volumetric recording of neuroactivity at cellular resolution and speed compatible with resolving calcium transients. Here, we introduce Light Beads Microscopy (LBM), a scalable and spatiotemporally optimal acquisition approach limited only by fluorescence life-time, where a set of axially-separated and temporally-distinct foci record the entire axial imaging range near-simultaneously, enabling volumetric recording at 1.41 × 108 voxels per second. Using LBM, we demonstrate mesoscopic and volumetric imaging at multiple scales in the mouse cortex, including cellular resolution recordings within ~3×5×0.5 mm3 volumes containing >200,000 neurons at ~5 Hz, recording of populations of ~1 million neurons within ~5.4×6×0.5 mm3 volumes at ~2Hz as well as higher-speed (9.6 Hz) sub-cellular resolution volumetric recordings. LBM provides an unprecedented opportunity for discovering the neurocomputations underlying cortex-wide encoding and processing of information in the mammalian brain.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted July 05, 2021.
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High-Speed, Cortex-Wide Volumetric Recording of Neuroactivity at Cellular Resolution using Light Beads Microscopy
Jeffrey Demas, Jason Manley, Frank Tejera, Hyewon Kim, Francisca Martínez Traub, Brandon Chen, Alipasha Vaziri
bioRxiv 2021.02.21.432164; doi: https://doi.org/10.1101/2021.02.21.432164
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High-Speed, Cortex-Wide Volumetric Recording of Neuroactivity at Cellular Resolution using Light Beads Microscopy
Jeffrey Demas, Jason Manley, Frank Tejera, Hyewon Kim, Francisca Martínez Traub, Brandon Chen, Alipasha Vaziri
bioRxiv 2021.02.21.432164; doi: https://doi.org/10.1101/2021.02.21.432164

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