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Human immunodeficiency reveals GIMAP5 as lymphocyte-specific regulator of senescence

Ann Y. Park, Michael Leney-Greene, Matthew Lynberg, Xijin Xu, Lixin Zheng, Yu Zhang, Helen Matthews, Brittany Chao, Aaron Morawski, Ping Jiang, Jahnavi Aluri, Elif Karakoc Aydiner, Ayca Kiykim, John Pascall, Isil Barlan, Sinan Sari, Geoff Butcher, V. Koneti Rao, Richard Lifton, Safa Baris, Ahmet Ozen, Silvia Vilarinho, Helen Su, Michael J. Lenardo
doi: https://doi.org/10.1101/2021.02.22.432146
Ann Y. Park
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Michael Leney-Greene
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
2Laboratory of Host Defenses, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Matthew Lynberg
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Xijin Xu
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Lixin Zheng
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Yu Zhang
2Laboratory of Host Defenses, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Helen Matthews
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Brittany Chao
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Aaron Morawski
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Ping Jiang
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Jahnavi Aluri
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Elif Karakoc Aydiner
5Division of Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey
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Ayca Kiykim
5Division of Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey
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John Pascall
7Laboratory of Lymphocyte Signaling and Development, The Babraham Institute, Cambridge, United Kingdom
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Isil Barlan
8The Isil Berat Barlan Center for Translational Medicine, Division of Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey
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Sinan Sari
9Department of Pediatric Gastroenterology, Gazi University Faculty of Medicine, Ankara, Turkey
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Geoff Butcher
7Laboratory of Lymphocyte Signaling and Development, The Babraham Institute, Cambridge, United Kingdom
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V. Koneti Rao
10Laboratory of Clinical Immunology & Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Richard Lifton
6Department of Genetics, Yale School of Medicine, Yale University, New Haven, CT 06520, USA
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Safa Baris
5Division of Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey
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Ahmet Ozen
5Division of Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey
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Silvia Vilarinho
3Section of Digestive Diseases, Department of Internal Medicine, Yale School of Medicine, New Haven, CT 06519, USA
4Departments of Pathology, Yale School of Medicine, New Haven, CT 06519, USA
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Helen Su
2Laboratory of Host Defenses, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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Michael J. Lenardo
1Laboratory of Immune System Biology and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
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  • For correspondence: mlenardo@niaid.nih.gov
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Abstract

Elucidating the molecular basis of immunodeficiency diseases is a powerful approach to discovering new immunoregulatory pathways in humans. Here we report 10 affected individuals from 4 families with a new immunodeficiency disease comprising of severe progressive lymphopenia, autoimmunity, immunodeficiency, and liver disease due to recessive loss of function variants in “GTPase of immunity-associated proteins” protein 5 (GIMAP5). We show that the disease involves the progressive loss of naïve T lymphocytes and a corresponding increase in antigen-experienced, but poorly functional and replicatively senescent T cells. In vivo treatment of Gimap5-deficient mice with rapamycin (an inhibitor of mTORC1) significantly restores the fraction of naïve T lymphocytes. Furthermore, a GIMAP5-deficient human patient who was treated with rapamycin (sirolimus) showed a remarkable reduction in spleen/lymph node size. Together, these observations reveal that GIMAP5 plays a critical role in lymphocyte metabolism which is essential for senescence prevention and immune competence, suggesting that an inhibitor of mTORC1 could be a valuable clinical intervention in treating patients deficient for GIMAP5.

Competing Interest Statement

The authors have declared no competing interest.

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Posted February 23, 2021.
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Human immunodeficiency reveals GIMAP5 as lymphocyte-specific regulator of senescence
Ann Y. Park, Michael Leney-Greene, Matthew Lynberg, Xijin Xu, Lixin Zheng, Yu Zhang, Helen Matthews, Brittany Chao, Aaron Morawski, Ping Jiang, Jahnavi Aluri, Elif Karakoc Aydiner, Ayca Kiykim, John Pascall, Isil Barlan, Sinan Sari, Geoff Butcher, V. Koneti Rao, Richard Lifton, Safa Baris, Ahmet Ozen, Silvia Vilarinho, Helen Su, Michael J. Lenardo
bioRxiv 2021.02.22.432146; doi: https://doi.org/10.1101/2021.02.22.432146
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Human immunodeficiency reveals GIMAP5 as lymphocyte-specific regulator of senescence
Ann Y. Park, Michael Leney-Greene, Matthew Lynberg, Xijin Xu, Lixin Zheng, Yu Zhang, Helen Matthews, Brittany Chao, Aaron Morawski, Ping Jiang, Jahnavi Aluri, Elif Karakoc Aydiner, Ayca Kiykim, John Pascall, Isil Barlan, Sinan Sari, Geoff Butcher, V. Koneti Rao, Richard Lifton, Safa Baris, Ahmet Ozen, Silvia Vilarinho, Helen Su, Michael J. Lenardo
bioRxiv 2021.02.22.432146; doi: https://doi.org/10.1101/2021.02.22.432146

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