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A “spindle and thread”-mechanism unblocks translation of N-terminally disordered proteins

Margit Kaldmäe, Thibault Vosselman, Xueying Zhong, Dilraj Lama, Gefei Chen, Mihkel Saluri, Nina Kronqvist, Jia Wei Siau, Aik Seng Ng, Farid J. Ghadessy, Pierre Sabatier, Borivoj Vojtesek, Médoune Sarr, Cagla Sahin, Nicklas Österlund, Leopold L. Ilag, Venla A. Väänänen, Saikiran Sedimbi, Roman A. Zubarev, Lennart Nilsson, Philip J. B. Koeck, Anna Rising, Nicolas Fritz, Jan Johansson, David P. Lane, Michael Landreh
doi: https://doi.org/10.1101/2021.02.22.432221
Margit Kaldmäe
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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  • For correspondence: Margit.Kaldmae@ki.se NXFritz@gmail.com Janne.Johansson@ki.se DPLane@p53lab.a-star.edu.sg Michael.Landreh@ki.se
Thibault Vosselman
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Xueying Zhong
2Department of Biomedical Engineering and Health Systems, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), KTH Royal Institute of Technology, 141 83 Huddinge, Sweden
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Dilraj Lama
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Gefei Chen
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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Mihkel Saluri
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
4School of Natural Sciences and Health, Tallinn University, Narva mnt 25, 10120, Tallinn, Estonia
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Nina Kronqvist
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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Jia Wei Siau
5p53 Laboratory Technology Development Group, A*STAR, 8A Biomedical Grove #06-06 Immunos, Singapore, 138648, Singapore
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Aik Seng Ng
5p53 Laboratory Technology Development Group, A*STAR, 8A Biomedical Grove #06-06 Immunos, Singapore, 138648, Singapore
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Farid J. Ghadessy
5p53 Laboratory Technology Development Group, A*STAR, 8A Biomedical Grove #06-06 Immunos, Singapore, 138648, Singapore
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Pierre Sabatier
6Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Borivoj Vojtesek
7Masaryk Memorial Cancer Institute, RECAMO, Zluty kopec 7, 656 53 Brno, Czech Republic
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Médoune Sarr
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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Cagla Sahin
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Nicklas Österlund
8Department of Biochemistry and Biophysics, Stockholm University, 10691 Stockholm, Sweden
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Leopold L. Ilag
9Department of Materials and Environmental Chemistry, Stockholm University, 10691 Stockholm, Sweden
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Venla A. Väänänen
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Saikiran Sedimbi
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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Roman A. Zubarev
6Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
10Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia
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Lennart Nilsson
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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Philip J. B. Koeck
2Department of Biomedical Engineering and Health Systems, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), KTH Royal Institute of Technology, 141 83 Huddinge, Sweden
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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Anna Rising
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
11Department of Anatomy, Physiology, and Biochemistry, Swedish University of Agricultural Sciences, Centre for Veterinary Medicine and Animal Science, Box 7045, 756 51 Uppsala, Sweden
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Nicolas Fritz
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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  • For correspondence: Margit.Kaldmae@ki.se NXFritz@gmail.com Janne.Johansson@ki.se DPLane@p53lab.a-star.edu.sg Michael.Landreh@ki.se
Jan Johansson
3Department of Biosciences and Nutrition, Karolinska Institutet, S-141 57, Huddinge, Sweden
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  • For correspondence: Margit.Kaldmae@ki.se NXFritz@gmail.com Janne.Johansson@ki.se DPLane@p53lab.a-star.edu.sg Michael.Landreh@ki.se
David P. Lane
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
4School of Natural Sciences and Health, Tallinn University, Narva mnt 25, 10120, Tallinn, Estonia
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  • For correspondence: Margit.Kaldmae@ki.se NXFritz@gmail.com Janne.Johansson@ki.se DPLane@p53lab.a-star.edu.sg Michael.Landreh@ki.se
Michael Landreh
1Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet – Biomedicum, Solnavägen 9, 17165 Solna, Sweden
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  • For correspondence: Margit.Kaldmae@ki.se NXFritz@gmail.com Janne.Johansson@ki.se DPLane@p53lab.a-star.edu.sg Michael.Landreh@ki.se
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Abstract

Protein disorder is a major hurdle for structural biology. A prominent example is the tumour suppressor p53, whose low expression levels and poor conformational stability due to a high degree of disorder pose major challenges to the development of cancer therapeutics. Here, we address these issues by fusing p53 to an engineered spider silk domain termed NT*. The chimeric protein displays highly efficient translation in vitro and in E. coli and is fully active in human cancer cells. The transmission electron microscopy structure and native mass spectrometry reveal that the full-length p53 fusion protein adopts a compact conformation. Molecular dynamics simulations show that the disordered transactivation domain of p53 is wound around the NT* domain via a series of folding events, resulting in a globular structure. We find that expression of B-Raf, another partially disordered cancer target, is similarly enhanced by fusion to NT*. In summary, we demonstrate how inducing co-translational folding via a molecular “spindle and thread” mechanism can overcome poor translation efficiency of partially disordered proteins.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://doi.org/10.5061/dryad.34tmpg4hr

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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A “spindle and thread”-mechanism unblocks translation of N-terminally disordered proteins
Margit Kaldmäe, Thibault Vosselman, Xueying Zhong, Dilraj Lama, Gefei Chen, Mihkel Saluri, Nina Kronqvist, Jia Wei Siau, Aik Seng Ng, Farid J. Ghadessy, Pierre Sabatier, Borivoj Vojtesek, Médoune Sarr, Cagla Sahin, Nicklas Österlund, Leopold L. Ilag, Venla A. Väänänen, Saikiran Sedimbi, Roman A. Zubarev, Lennart Nilsson, Philip J. B. Koeck, Anna Rising, Nicolas Fritz, Jan Johansson, David P. Lane, Michael Landreh
bioRxiv 2021.02.22.432221; doi: https://doi.org/10.1101/2021.02.22.432221
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A “spindle and thread”-mechanism unblocks translation of N-terminally disordered proteins
Margit Kaldmäe, Thibault Vosselman, Xueying Zhong, Dilraj Lama, Gefei Chen, Mihkel Saluri, Nina Kronqvist, Jia Wei Siau, Aik Seng Ng, Farid J. Ghadessy, Pierre Sabatier, Borivoj Vojtesek, Médoune Sarr, Cagla Sahin, Nicklas Österlund, Leopold L. Ilag, Venla A. Väänänen, Saikiran Sedimbi, Roman A. Zubarev, Lennart Nilsson, Philip J. B. Koeck, Anna Rising, Nicolas Fritz, Jan Johansson, David P. Lane, Michael Landreh
bioRxiv 2021.02.22.432221; doi: https://doi.org/10.1101/2021.02.22.432221

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