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Synergy of chemotherapy and macrophage depletion leads to T cell memory activation and durable triple negative breast cancer regression

Swarnima Singh, Nigel Lee, Igor Bado, Clark Hamor, Licheng Zhang, Sergio Aguirre, Jingyuan Hu, Yichao Shen, Yitian Xu, Yang Gao, Diego Pedroza, Na Zhao, Shu-Hsia Chen, Ying-Wooi Wan, View ORCID ProfileZhandong Liu, Jeffrey T. Chang, Daniel Hollern, Charles M. Perou, View ORCID ProfileXiang H.F. Zhang, Jeffrey M. Rosen
doi: https://doi.org/10.1101/2021.02.22.432300
Swarnima Singh
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
2Translational Biology and Molecular Medicine, Baylor College of Medicine
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Nigel Lee
3Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Houston, United States
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Igor Bado
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Clark Hamor
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Licheng Zhang
6Immunominotoring Core, Center for Immunotherapy Research, Houston Methodist Research Institute (HMRI), 6670 Bertner Avenue, R9-330.11, Houston, Texas 77030
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Sergio Aguirre
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Jingyuan Hu
3Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Houston, United States
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Yichao Shen
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Yitian Xu
6Immunominotoring Core, Center for Immunotherapy Research, Houston Methodist Research Institute (HMRI), 6670 Bertner Avenue, R9-330.11, Houston, Texas 77030
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Yang Gao
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Diego Pedroza
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Na Zhao
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
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Shu-Hsia Chen
6Immunominotoring Core, Center for Immunotherapy Research, Houston Methodist Research Institute (HMRI), 6670 Bertner Avenue, R9-330.11, Houston, Texas 77030
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Ying-Wooi Wan
3Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Houston, United States
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Zhandong Liu
3Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Houston, United States
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  • ORCID record for Zhandong Liu
Jeffrey T. Chang
4Department of Integrative Biology and Pharmacology, The University of Texas Health Science Center at Houston
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Daniel Hollern
7Salk Institute for Biological Studies, Salk Cancer Center, NOMIS Center for Immunobiology and Microbial Pathogenesis, 10010 N Torrey Pines Rd • La Jolla, CA 92037
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Charles M. Perou
5Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA
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Xiang H.F. Zhang
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
2Translational Biology and Molecular Medicine, Baylor College of Medicine
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  • ORCID record for Xiang H.F. Zhang
  • For correspondence: jrosen@bcm.edu
Jeffrey M. Rosen
1Department of Molecular and Cellular Biology and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine
2Translational Biology and Molecular Medicine, Baylor College of Medicine
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  • For correspondence: jrosen@bcm.edu
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Abstract

Immunosuppressive elements within the tumor microenvironment such as Tumor Associated Macrophages (TAMs) can present a barrier to successful anti-tumor responses by cytolytic T cells. We employed preclinical syngeneic p53 null mouse models of TNBC to develop a treatment regimen that harnessed the immunostimulatory effects of low-dose chemotherapy coupled with the pharmacologic inhibition of TAMs. Combination therapy was used to successfully treat several highly aggressive, claudin-low murine mammary tumors and lung metastasis. Long-term responders developed tertiary lymphoid structures co-infiltrated by T and B cells at the treatment site. Mechanistically, CD86+ antigen-experienced T cells exhibited polyclonal expansion and resulted in exceptional responses upon tumor rechallenge. Combination treatment also eliminated lung metastases. High dimensional transcriptomic data for CD45+ immune cells lead to the identification of an aberrant developmental trajectory for TAMs that were resistant to treatment. Signatures derived from these TAM populations were predictive of patient response to our therapy. This study illustrates the complexity of tumor infiltrating myeloid cells and highlights the importance of personalized immuno-genomics to inform therapeutic regimens.

Statement of significance Triple negative breast cancer is aggressive and hard to treat as it has no targeted therapies. Targeting immunosuppressive macrophages in murine models of TNBC alongside an immunostimulatory chemotherapy achieved long-term primary tumor regression in multiple murine mouse models. The transcriptomic heterogeneity between TAMs in phenotypically similar models can be used to uncover future therapeutic targets. Additionally, signatures derived from these murine models can be applied to TNBC patient data sets to predict cohorts of patients that will respond to the treatment strategy.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted February 22, 2021.
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Synergy of chemotherapy and macrophage depletion leads to T cell memory activation and durable triple negative breast cancer regression
Swarnima Singh, Nigel Lee, Igor Bado, Clark Hamor, Licheng Zhang, Sergio Aguirre, Jingyuan Hu, Yichao Shen, Yitian Xu, Yang Gao, Diego Pedroza, Na Zhao, Shu-Hsia Chen, Ying-Wooi Wan, Zhandong Liu, Jeffrey T. Chang, Daniel Hollern, Charles M. Perou, Xiang H.F. Zhang, Jeffrey M. Rosen
bioRxiv 2021.02.22.432300; doi: https://doi.org/10.1101/2021.02.22.432300
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Synergy of chemotherapy and macrophage depletion leads to T cell memory activation and durable triple negative breast cancer regression
Swarnima Singh, Nigel Lee, Igor Bado, Clark Hamor, Licheng Zhang, Sergio Aguirre, Jingyuan Hu, Yichao Shen, Yitian Xu, Yang Gao, Diego Pedroza, Na Zhao, Shu-Hsia Chen, Ying-Wooi Wan, Zhandong Liu, Jeffrey T. Chang, Daniel Hollern, Charles M. Perou, Xiang H.F. Zhang, Jeffrey M. Rosen
bioRxiv 2021.02.22.432300; doi: https://doi.org/10.1101/2021.02.22.432300

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