Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Billy Taj, Mobolaji Adeolu, Xuejian Xiong, Jordan Ang, Nirvana Nursimulu, John Parkinson
doi: https://doi.org/10.1101/2021.02.23.432558
Billy Taj
1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mobolaji Adeolu
1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xuejian Xiong
1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jordan Ang
2Department of Chemical and Physical Sciences, University of Toronto, Mississauga, Ontario, Canada L5L 1C6
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nirvana Nursimulu
1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
3Department of Computer Science, University of Toronto, Toronto, ON, Canada M5S 3G4
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
John Parkinson
1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
4Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada M5S 3G4
5Department of Biochemistry, University of Toronto, Toronto, ON, Canada M5S 3G4
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: john.parkinson@utoronto.ca
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/2021.02.23.432558
History 
  • February 23, 2021.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Billy Taj1,†,
  2. Mobolaji Adeolu1,†,
  3. Xuejian Xiong1,
  4. Jordan Ang2,
  5. Nirvana Nursimulu1,3 and
  6. John Parkinson1,4,5,*
  1. 1Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4
  2. 2Department of Chemical and Physical Sciences, University of Toronto, Mississauga, Ontario, Canada L5L 1C6
  3. 3Department of Computer Science, University of Toronto, Toronto, ON, Canada M5S 3G4
  4. 4Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada M5S 3G4
  5. 5Department of Biochemistry, University of Toronto, Toronto, ON, Canada M5S 3G4
  1. ↵*Contact information for the Corresponding Author: Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, Canada M5G 0A4, john.parkinson{at}utoronto.ca
  1. ↵† These authors contributed equally to the work and should be regarded as co-first author

Back to top
PreviousNext
Posted February 23, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
Billy Taj, Mobolaji Adeolu, Xuejian Xiong, Jordan Ang, Nirvana Nursimulu, John Parkinson
bioRxiv 2021.02.23.432558; doi: https://doi.org/10.1101/2021.02.23.432558
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
Billy Taj, Mobolaji Adeolu, Xuejian Xiong, Jordan Ang, Nirvana Nursimulu, John Parkinson
bioRxiv 2021.02.23.432558; doi: https://doi.org/10.1101/2021.02.23.432558

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3701)
  • Biochemistry (7827)
  • Bioengineering (5699)
  • Bioinformatics (21349)
  • Biophysics (10607)
  • Cancer Biology (8212)
  • Cell Biology (11978)
  • Clinical Trials (138)
  • Developmental Biology (6790)
  • Ecology (10427)
  • Epidemiology (2065)
  • Evolutionary Biology (13912)
  • Genetics (9733)
  • Genomics (13112)
  • Immunology (8176)
  • Microbiology (20076)
  • Molecular Biology (7882)
  • Neuroscience (43186)
  • Paleontology (321)
  • Pathology (1285)
  • Pharmacology and Toxicology (2269)
  • Physiology (3365)
  • Plant Biology (7259)
  • Scientific Communication and Education (1317)
  • Synthetic Biology (2012)
  • Systems Biology (5551)
  • Zoology (1135)