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Automated classification of signal sources in mesoscale calcium imaging

View ORCID ProfileBrian R. Mullen, View ORCID ProfileSydney C. Weiser, View ORCID ProfileDesiderio Ascencio, View ORCID ProfileJames B. Ackman
doi: https://doi.org/10.1101/2021.02.23.432573
Brian R. Mullen
1Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA
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Sydney C. Weiser
1Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA
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Desiderio Ascencio
2Department of Psychology, University of California Santa Cruz, Santa Cruz, CA, USA
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James B. Ackman
1Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, USA
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  • For correspondence: jackman@ucsc.edu
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Abstract

Functional imaging of neural cell populations is critical for mapping intra− and inter−regional network dynamics across the neocortex. Recently we showed that an unsupervised machine learning decomposition of densely sampled recordings of cortical calcium dynamics results in a collection of components comprised of neuronal signal sources distinct from optical, movement, and vascular artifacts. Here we build a supervised learning classifier that automatically separates neural activity and artifact components, using a set of extracted spatial and temporal metrics that characterize the respective components. We demonstrate that the performance of the machine classifier matches human identification of signal components in novel data sets. Further, we analyze control data recorded in glial cell reporter and non−fluorescent mouse lines that validates human and machine identification of functional component class. This combined workflow of data−driven video decomposition and machine classification of signal sources will aid robust and scalable mapping of complex cerebral dynamics.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted February 24, 2021.
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Automated classification of signal sources in mesoscale calcium imaging
Brian R. Mullen, Sydney C. Weiser, Desiderio Ascencio, James B. Ackman
bioRxiv 2021.02.23.432573; doi: https://doi.org/10.1101/2021.02.23.432573
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Automated classification of signal sources in mesoscale calcium imaging
Brian R. Mullen, Sydney C. Weiser, Desiderio Ascencio, James B. Ackman
bioRxiv 2021.02.23.432573; doi: https://doi.org/10.1101/2021.02.23.432573

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