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Reconstitution of ultrawide DNA origami pores in liposomes for transmembrane transport of macromolecules

View ORCID ProfileAlessio Fragasso, View ORCID ProfileNicola De Franceschi, View ORCID ProfilePierre Stömmer, View ORCID ProfileEli O. van der Sluis, View ORCID ProfileHendrik Dietz, View ORCID ProfileCees Dekker
doi: https://doi.org/10.1101/2021.02.24.432733
Alessio Fragasso
1Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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  • ORCID record for Alessio Fragasso
Nicola De Franceschi
1Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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Pierre Stömmer
2Physik Department, Technische Universität München, Am Coulombwall 4a, Garching bei München D-85748, Germany
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Eli O. van der Sluis
1Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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Hendrik Dietz
2Physik Department, Technische Universität München, Am Coulombwall 4a, Garching bei München D-85748, Germany
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  • For correspondence: dietz@tum.de c.dekker@tudelft.nl
Cees Dekker
1Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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  • For correspondence: dietz@tum.de c.dekker@tudelft.nl
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Abstract

Molecular traffic across lipid membranes is a vital process in cell biology that involves specialized biological pores with a great variety of pore diameters, from fractions of a nanometer to >30 nm. Creating artificial membrane pores covering similar size and complexity will aid the understanding of transmembrane molecular transport in cells, while artificial pores are also a necessary ingredient for synthetic cells. Here, we report the construction of DNA origami nanopores that have an inner diameter as large as 30 nm. We developed new methods to successfully insert these ultrawide pores into the lipid membrane of giant unilamellar vesicles (GUVs) by administering the pores concomitantly with vesicle formation in an inverted-emulsion cDICE technique. The reconstituted pores permit the transmembrane diffusion of large macromolecules such as folded proteins, which demonstrates the formation of large membrane-spanning open pores. The pores are size selective as dextran molecules with a diameter up to 22 nm can traverse the pores, whereas larger dextran molecules are blocked. By FRAP measurements and modelling of the GFP influx rate, we find that up to hundreds of pores can be functionally reconstituted into a single GUV. Our technique bears great potential for applications across different fields from biomimetics, synthetic biology, to drug delivery.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 24, 2021.
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Reconstitution of ultrawide DNA origami pores in liposomes for transmembrane transport of macromolecules
Alessio Fragasso, Nicola De Franceschi, Pierre Stömmer, Eli O. van der Sluis, Hendrik Dietz, Cees Dekker
bioRxiv 2021.02.24.432733; doi: https://doi.org/10.1101/2021.02.24.432733
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Reconstitution of ultrawide DNA origami pores in liposomes for transmembrane transport of macromolecules
Alessio Fragasso, Nicola De Franceschi, Pierre Stömmer, Eli O. van der Sluis, Hendrik Dietz, Cees Dekker
bioRxiv 2021.02.24.432733; doi: https://doi.org/10.1101/2021.02.24.432733

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