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Conserved structures of neural activity in sensorimotor cortex of freely moving rats allow cross-subject decoding

Svenja Melbaum, David Eriksson, Thomas Brox, Ilka Diester
doi: https://doi.org/10.1101/2021.03.04.433869
Svenja Melbaum
1Computer Vision Group, Dept. of Computer Science, University of Freiburg, 79110 Freiburg, Germany.
2BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Georges-Köhler-Allee 201, IMBIT, 79110 Freiburg, Germany.
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David Eriksson
2BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Georges-Köhler-Allee 201, IMBIT, 79110 Freiburg, Germany.
3Optophysiology Lab, Faculty of Biology, University of Freiburg, 79110 Freiburg, Germany.
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Thomas Brox
1Computer Vision Group, Dept. of Computer Science, University of Freiburg, 79110 Freiburg, Germany.
2BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Georges-Köhler-Allee 201, IMBIT, 79110 Freiburg, Germany.
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Ilka Diester
2BrainLinks-BrainTools Cluster of Excellence, University of Freiburg, Georges-Köhler-Allee 201, IMBIT, 79110 Freiburg, Germany.
3Optophysiology Lab, Faculty of Biology, University of Freiburg, 79110 Freiburg, Germany.
4Bernstein Center Freiburg, University of Freiburg, 79104 Freiburg, Germany.
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  • For correspondence: ilka.diester@biologie.uni-freiburg.de
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Abstract

Our knowledge about neuronal activity in the sensorimotor cortex relies primarily on stereotyped movements which are strictly controlled via the experimental settings. It remains unclear how results can be carried over to less constrained behavior, i.e. freely moving subjects. Towards this goal, we developed a self-paced behavioral paradigm which encouraged rats to conduct different types of movements. Via bilateral electrophysiological recordings across the entire sensorimotor cortex and simultaneous paw tracking, we identified behavioral coupling of neurons with lateralization and an anterior-posterior gradient from premotor to primary sensory cortex. The structure of population activity patterns was conserved across animals, in spite of severe under sampling of the total number of neurons and variations of electrode positions across individuals. Via alignments of low-dimensional neural manifolds, we demonstrate cross-subject and cross-session generalization in a decoding task arguing for a conserved neuronal code.

One-sentence summary Similarity of neural population structures across the sensorimotor cortex enables generalization across animals in the decoding of unconstrained behavior.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 05, 2021.
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Conserved structures of neural activity in sensorimotor cortex of freely moving rats allow cross-subject decoding
Svenja Melbaum, David Eriksson, Thomas Brox, Ilka Diester
bioRxiv 2021.03.04.433869; doi: https://doi.org/10.1101/2021.03.04.433869
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Conserved structures of neural activity in sensorimotor cortex of freely moving rats allow cross-subject decoding
Svenja Melbaum, David Eriksson, Thomas Brox, Ilka Diester
bioRxiv 2021.03.04.433869; doi: https://doi.org/10.1101/2021.03.04.433869

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