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Combined MEK and STAT3 inhibition reprograms stromal inflammation to overcome immunotherapy resistance in pancreatic cancer

Jashodeep Datta, Xizi Dai, Anna Bianchi, Iago De Castro Silva, Siddharth Mehra, Vanessa Garrido, Purushottam Lamichhane, Samara Singh, Zhiqun Zhou, Austin R. Dosch, Fanuel Messaggio, Yuguang Ban, Oliver Umland, Peter J. Hosein, Nagaraj S. Nagathihalli, Nipun B. Merchant
doi: https://doi.org/10.1101/2021.03.07.434236
Jashodeep Datta
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
2Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Xizi Dai
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Anna Bianchi
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Iago De Castro Silva
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Siddharth Mehra
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Vanessa Garrido
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Purushottam Lamichhane
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
3LECOM School of Dental Medicine, Bradenton, FL 34211, USA
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Samara Singh
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Zhiqun Zhou
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Austin R. Dosch
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Fanuel Messaggio
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Yuguang Ban
4Bioinformatics and Biostatistics Shared Resource, Sylvester Comprehensive Cancer Center, Miami, FL 33136, USA
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Oliver Umland
5Diabetes Research Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Peter J. Hosein
2Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA
6Department of Medicine, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Nagaraj S. Nagathihalli
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
2Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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Nipun B. Merchant
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA
2Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA
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  • For correspondence: nmerchant@med.miami.edu
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ABSTRACT

Pancreatic ductal adenocarcinoma (PDAC) is characterized by immune exclusion, pro-inflammatory polarization of cancer-associated fibroblasts (CAF), and resistance to immune checkpoint inhibition (ICI). We have previously demonstrated that reciprocally activated RAS/MEK/ERK and JAK/STAT3 pathways mediate therapeutic resistance, while combined MEK and STAT3 inhibition (MEKi+STAT3i) overcomes such resistance in preclinical models. We now show that combined MEKi+STAT3i not only alters stromal architecture but also uncovers stromal plasticity by revealing a substantial attenuation of Il6/Cxcl1-expressing secretory and Lrrc15-expressing myofibroblastic CAF phenotypes with a concomitant enrichment of Ly6a/Cd34-expressing CAF phenotypes exhibiting mesenchymal progenitor-like properties via single-cell RNA sequencing in Ptf1acre/+;LSL-KrasG12D/+;Tgfbr2flox/flox(PKT) mice. This remodeling of CAF heterogeneity is associated with reprogramming of immunosuppressive myeloid populations and enhanced trafficking of CD8+ T-cells which exhibit a distinct effector transcriptional program. These MEKi+STAT3i-mediated repercussions are in part CAF-dependent, since CRISPR/Cas9 genetic silencing of CAF-restricted Mek1/Stat3 mitigates inflammatory CAF polarization and myeloid infiltration in vivo. Addition of MEKi+STAT3i to PD-1 blockade overcomes ICI resistance by significantly augmenting anti-tumor responses and dramatically improving survival in PKT mice compared with anti-PD-1 monotherapy. The addition of MEKi+STAT3i to PD-1 blockade not only augments the recruitment of activated and memory T-cell populations, but also improves their degranulating capacity and functional cytotoxicity compared to PD-1 blockade alone. Importantly, treatment of a patient with chemotherapy-refractory metastatic PDAC with MEKi (Trametinib), STAT3i (Ruxolitinib), and PD-1 inhibitor (Nivolumab) was well-tolerated and yielded clinical benefit. These data uncover a novel paradigm in which combined MEKi+STAT3i reprograms stromal inflammation and immune tolerance to overcome immunotherapy resistance in PDAC.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Summary: Combined MEK and STAT3 inhibition reprograms stromal inflammation and the immunosuppressive myeloid microenvironment to enhance intratumoral T-cell trafficking and effector programming, and overcomes immunotherapy resistance in pancreatic cancer.

  • 1. Single cell RNA sequencing data revealing uncovering of stromal plasticity and CAF heterogeneity following MEKi+STAT3i in PKT mice 2. Lineage trajectory reconstruction of CAF evolutionary dynamics 3. CRISPR/Cas9 genetic editing of Mek1 and Stat3 in KPC CAFs and in vivo orthotopic models thereof

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Posted February 23, 2022.
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Combined MEK and STAT3 inhibition reprograms stromal inflammation to overcome immunotherapy resistance in pancreatic cancer
Jashodeep Datta, Xizi Dai, Anna Bianchi, Iago De Castro Silva, Siddharth Mehra, Vanessa Garrido, Purushottam Lamichhane, Samara Singh, Zhiqun Zhou, Austin R. Dosch, Fanuel Messaggio, Yuguang Ban, Oliver Umland, Peter J. Hosein, Nagaraj S. Nagathihalli, Nipun B. Merchant
bioRxiv 2021.03.07.434236; doi: https://doi.org/10.1101/2021.03.07.434236
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Combined MEK and STAT3 inhibition reprograms stromal inflammation to overcome immunotherapy resistance in pancreatic cancer
Jashodeep Datta, Xizi Dai, Anna Bianchi, Iago De Castro Silva, Siddharth Mehra, Vanessa Garrido, Purushottam Lamichhane, Samara Singh, Zhiqun Zhou, Austin R. Dosch, Fanuel Messaggio, Yuguang Ban, Oliver Umland, Peter J. Hosein, Nagaraj S. Nagathihalli, Nipun B. Merchant
bioRxiv 2021.03.07.434236; doi: https://doi.org/10.1101/2021.03.07.434236

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