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THINGSvision: a Python toolbox for streamlining the extraction of activations from deep neural networks

View ORCID ProfileLukas Muttenthaler, Martin N. Hebart
doi: https://doi.org/10.1101/2021.03.11.434979
Lukas Muttenthaler
Vision and Computational Cognition Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
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  • ORCID record for Lukas Muttenthaler
  • For correspondence: muttenthaler@cbs.mpg.de hebart@cbs.mpg.de
Martin N. Hebart
Vision and Computational Cognition Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
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  • For correspondence: muttenthaler@cbs.mpg.de hebart@cbs.mpg.de
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Abstract

Over the past decade, deep neural network (DNN) models have received a lot of attention due to their oftentimes near-human object classification performance and their excellent prediction of signals recorded from biological visual systems. To better understand the function of these networks and relate them to hypotheses about brain activity and behavior, researchers need to extract the activations to images across different DNN layers. The abundance of different DNN variants, however, can often be unwieldy, and the task of extracting DNN activations from different layers may be non-trivial and error-prone for someone without a strong computational background. Thus, researchers in the fields of cognitive science and computational neuroscience would benefit from a library or package that supports a user in the extraction task. THINGSvision is a new Python module that aims at closing this gap by providing a simple and unified tool for extracting layer activations for a wide range of pretrained and randomly-initialized neural network architectures, even for users with little to no programming experience. We demonstrate the general utility of THINGSvision on a number of functional MRI and behavioral datasets, using representational similarity analysis which can be performed as an integral part of THINGSvision to relate DNN activations to empirical data. Together, THINGSvision enables researchers across diverse fields to extract features in a streamlined manner for their custom image dataset, thereby improving the ease of relating DNNs, brain activity, and behavior, and improving the reproducibility of findings in these research fields.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/ViCCo-Group/THINGSvision

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 12, 2021.
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THINGSvision: a Python toolbox for streamlining the extraction of activations from deep neural networks
Lukas Muttenthaler, Martin N. Hebart
bioRxiv 2021.03.11.434979; doi: https://doi.org/10.1101/2021.03.11.434979
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THINGSvision: a Python toolbox for streamlining the extraction of activations from deep neural networks
Lukas Muttenthaler, Martin N. Hebart
bioRxiv 2021.03.11.434979; doi: https://doi.org/10.1101/2021.03.11.434979

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