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Primordial capsid and spooled ssDNA genome structures penetrate ancestral events of eukaryotic viruses

View ORCID ProfileAnna Munke, Kei Kimura, Yuji Tomaru, Han Wang, Kazuhiro Yoshida, Seiya Mito, Yuki Hongo, View ORCID ProfileKenta Okamoto
doi: https://doi.org/10.1101/2021.03.14.435335
Anna Munke
1The Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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  • ORCID record for Anna Munke
  • For correspondence: anna.munke@desy.de kenta.okamoto@icm.uu.se
Kei Kimura
2Department of Biological Resource Science, Faculty of Agriculture, Saga University, Saga, Japan
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Yuji Tomaru
3Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Hatsukaichi, Hiroshima, Japan
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Han Wang
1The Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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Kazuhiro Yoshida
4Graduate School of Agriculture, Saga University, Saga, Japan
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Seiya Mito
2Department of Biological Resource Science, Faculty of Agriculture, Saga University, Saga, Japan
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Yuki Hongo
5Bioinformatics and Biosciences Division, Fisheries Resources Institute, Japan Fisheries Research and Education Agency, Fukuura, Kanazawa, Yokohama, Kanagawa, Japan
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Kenta Okamoto
1The Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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  • ORCID record for Kenta Okamoto
  • For correspondence: anna.munke@desy.de kenta.okamoto@icm.uu.se
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Abstract

Marine algae viruses are important for controlling microorganism communities in the marine ecosystem and played fundamental roles during the early events of viral evolution. Here, we have focused on one major group of marine algae viruses, the ssDNA viruses from the Bacilladnaviridae family. We present the capsid structure of the bacilladnavirus, Chaetoceros tenuissimus DNA virus type II (CtenDNAV-II), determined at 2.3 Å resolution. A structure-based phylogenetic analysis supported the previous theory that bacilladnaviruses have acquired their capsid protein via horizontal gene transfer from a ssRNA virus. The capsid protein contains the widespread virus jelly-roll fold, but has additional unique features; a third β-sheet and a long C-terminal tail. Further, low-resolution reconstructions of the CtenDNAV-II genome revealed a partially spooled structure, an arrangement previously only described for dsRNA and dsDNA viruses. Together, these results exemplify the importance of genetic recombination for the emergence and evolution of ssDNA viruses and provide important insights into the underlying mechanisms that dictate genome organisation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 18, 2021.
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Primordial capsid and spooled ssDNA genome structures penetrate ancestral events of eukaryotic viruses
Anna Munke, Kei Kimura, Yuji Tomaru, Han Wang, Kazuhiro Yoshida, Seiya Mito, Yuki Hongo, Kenta Okamoto
bioRxiv 2021.03.14.435335; doi: https://doi.org/10.1101/2021.03.14.435335
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Primordial capsid and spooled ssDNA genome structures penetrate ancestral events of eukaryotic viruses
Anna Munke, Kei Kimura, Yuji Tomaru, Han Wang, Kazuhiro Yoshida, Seiya Mito, Yuki Hongo, Kenta Okamoto
bioRxiv 2021.03.14.435335; doi: https://doi.org/10.1101/2021.03.14.435335

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