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Optimizing smartphone-based canopy hemispherical photography

View ORCID ProfileGastón Mauro Díaz
doi: https://doi.org/10.1101/2021.03.17.435793
Gastón Mauro Díaz
aNational Scientific and Technical Research Council —Argentina (CONICET);
bPatagonian Andes Forest Research and Extension Center (CIEFAP)
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  • ORCID record for Gastón Mauro Díaz
  • For correspondence: gdiaz@correociefap.org.ar
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Abstract

  1. Hemispherical photography (HP) is a long-standing tool for forest canopy characterization. Currently, there are low-cost fisheye lenses to convert smartphones into high-portable HP equipment; however, they cannot be used whenever since HP is sensitive to illumination conditions. To obtain sound results outside diffuse light conditions, a deep-learning-based system needs to be developed. A ready-to-use alternative is the multiscale color-based binarization algorithm, but it can provide moderate-quality results only for open forests. To overcome this limitation, I propose coupling it with the model-based local thresholding algorithm. I call this coupling the MBCB approach.

  2. Methods presented here are part of the R package CAnopy IMage ANalysis (caiman), which I am developing. The accuracy assessment of the new MBCB approach was done with data from a pine plantation and a broadleaf native forest.

  3. The coefficient of determination (R2) was greater than 0.7, and the root mean square error (RMSE) lower than 20 %, both for plant area index calculation.

  4. Results suggest that the new MBCB approach allows the calculation of unbiased canopy metrics from smartphone-based HP acquired in sunlight conditions, even for closed canopies. This facilitates large-scale and opportunistic sampling with hemispherical photography.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://osf.io/atywm/

  • https://github.com/GastonMauroDiaz/caiman

  • https://gist.github.com/GastonMauroDiaz/1b5962c7e4c2ccebe4c6e4223a19fba1

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 19, 2021.
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Optimizing smartphone-based canopy hemispherical photography
Gastón Mauro Díaz
bioRxiv 2021.03.17.435793; doi: https://doi.org/10.1101/2021.03.17.435793
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Optimizing smartphone-based canopy hemispherical photography
Gastón Mauro Díaz
bioRxiv 2021.03.17.435793; doi: https://doi.org/10.1101/2021.03.17.435793

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