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A synthetic receptor platform enables rapid and portable monitoring of liver dysfunction via engineered bacteria

View ORCID ProfileHung-Ju Chang, View ORCID ProfileAna Zuniga, View ORCID ProfileIsmael Conejero, View ORCID ProfilePeter L. Voyvodic, View ORCID ProfileJerome Gracy, View ORCID ProfileElena Fajardo-Ruiz, View ORCID ProfileMartin Cohen-Gonsaud, View ORCID ProfileGuillaume Cambray, View ORCID ProfileGeorges-Philippe Pageaux, View ORCID ProfileMagdalena Meszaros, View ORCID ProfileLucy Meunier, View ORCID ProfileJerome Bonnet
doi: https://doi.org/10.1101/2021.03.24.436753
Hung-Ju Chang
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Ana Zuniga
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Ismael Conejero
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
2Neuropsychiatry: Epidemiological and Clinical Research, Inserm Unit 1061, Montpellier, France.
3Department of Psychiatry, CHU Nimes, University of Montpellier, Montpellier, France.
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Peter L. Voyvodic
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Jerome Gracy
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Elena Fajardo-Ruiz
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Martin Cohen-Gonsaud
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Guillaume Cambray
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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Georges-Philippe Pageaux
4Department of Hepatogastroenterology, Hepatology and Liver Transplantation Unit, Saint Eloi Hospital, University of Montpellier, Montpellier, France.
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Magdalena Meszaros
4Department of Hepatogastroenterology, Hepatology and Liver Transplantation Unit, Saint Eloi Hospital, University of Montpellier, Montpellier, France.
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Lucy Meunier
4Department of Hepatogastroenterology, Hepatology and Liver Transplantation Unit, Saint Eloi Hospital, University of Montpellier, Montpellier, France.
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Jerome Bonnet
1Centre de Biologie Structurale (CBS). INSERM U1054, CNRS UMR5048, University of Montpellier, France.
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  • For correspondence: jerome.bonnet@inserm.fr
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ABSTRACT

Bacterial biosensors, or bactosensors, are promising field-deployable agents for medical and environmental diagnostics. However, the lack of scalable frameworks to systematically program ligand detection limits their applications. Here we present a synthetic receptor platform, termed EMeRALD (Engineered Modularized Receptors Activated via Ligand-induced Dimerization) which supports the modular assembly of sensing modules onto a high-performance, generic signaling scaffold controlling gene expression in E. coli. We applied EMeRALD to detect bile salts, a biomarker of liver dysfunction, by repurposing sensing modules from enteropathogenic Vibrio species. We improved the sensitivity and lowered the limit-of-detection of the sensing module by directed evolution. We then engineered a colorimetric bactosensor detecting pathological bile salt levels in serum from patients having undergone liver transplant, providing an output detectable by the naked-eye. The EMeRALD technology enables functional exploration of natural sensing modules and rapid engineering of synthetic receptors for diagnostics, environmental monitoring, and control of therapeutic microbes.

Competing Interest Statement

H.J.C., J.B., J.G., and M.C.G. are listed as inventors on two patent applications related to this work.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 29, 2021.
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A synthetic receptor platform enables rapid and portable monitoring of liver dysfunction via engineered bacteria
Hung-Ju Chang, Ana Zuniga, Ismael Conejero, Peter L. Voyvodic, Jerome Gracy, Elena Fajardo-Ruiz, Martin Cohen-Gonsaud, Guillaume Cambray, Georges-Philippe Pageaux, Magdalena Meszaros, Lucy Meunier, Jerome Bonnet
bioRxiv 2021.03.24.436753; doi: https://doi.org/10.1101/2021.03.24.436753
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A synthetic receptor platform enables rapid and portable monitoring of liver dysfunction via engineered bacteria
Hung-Ju Chang, Ana Zuniga, Ismael Conejero, Peter L. Voyvodic, Jerome Gracy, Elena Fajardo-Ruiz, Martin Cohen-Gonsaud, Guillaume Cambray, Georges-Philippe Pageaux, Magdalena Meszaros, Lucy Meunier, Jerome Bonnet
bioRxiv 2021.03.24.436753; doi: https://doi.org/10.1101/2021.03.24.436753

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