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Consensus tetratricopeptide repeat proteins are complex superhelical nanosprings

Marie Synakewicz, Rohan S. Eapen, Albert Perez-Riba, Daniela Bauer, Andreas Weißl, Gerhard Fischer, Marko Hyvönen, Matthias Rief, Laura S. Itzhaki, Johannes Stigler
doi: https://doi.org/10.1101/2021.03.27.437344
Marie Synakewicz
1Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, United Kingdom
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  • For correspondence: lsi10@cam.ac.uk m.synakewicz@bioc.uzh.ch stigler@genzentrum.lmu.de
Rohan S. Eapen
1Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, United Kingdom
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Albert Perez-Riba
1Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, United Kingdom
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Daniela Bauer
2Physik-Department, Technische Universität München, James-Franck-Straße 1, 85748 Garching, Germany
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Andreas Weißl
2Physik-Department, Technische Universität München, James-Franck-Straße 1, 85748 Garching, Germany
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Gerhard Fischer
3Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1GA, United Kingdom
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Marko Hyvönen
3Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1GA, United Kingdom
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Matthias Rief
2Physik-Department, Technische Universität München, James-Franck-Straße 1, 85748 Garching, Germany
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Laura S. Itzhaki
1Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, United Kingdom
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  • For correspondence: lsi10@cam.ac.uk m.synakewicz@bioc.uzh.ch stigler@genzentrum.lmu.de
Johannes Stigler
4Gene Center Munich, Ludwig-Maximilians-Universität München, Feodor-Lynen-Straße 25, 81377 München, Germany
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  • For correspondence: lsi10@cam.ac.uk m.synakewicz@bioc.uzh.ch stigler@genzentrum.lmu.de
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Abstract

Tandem-repeat proteins comprise small secondary structure motifs that stack to form one-dimensional arrays with distinctive dynamic properties that are proposed to direct their cellular functions. Here, we report the force response of consensus-designed tetratricopeptide repeats (CTPRs) – superhelical arrays of short helix-turn-helix motifs. Not only are we able to directly observe the repeat-protein superhelix in the force data, but we also find that individual repeats undergo rapid fluctuations between folded and unfolded conformations resulting in a spring-like mechanical response. Using protein engineering, we show how the superhelical geometry can be altered by carefully placed amino-acid substitution and subsequently employ Ising model analysis to examine how these changes affect repeat stability and inter-repeat coupling in ensemble and single-molecule experiments. The Ising models furthermore allow us to map the unfolding pathway of CTPRs under mechanical load revealing how the repeat arrays are unzipped from both ends at the same time. Our findings provide the means to dissect and modulate repeat-protein dynamics and stability, thereby supporting ongoing research efforts into their functional relevance and exploiting them for nanotechnology and biomedical applications.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 28, 2021.
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Consensus tetratricopeptide repeat proteins are complex superhelical nanosprings
Marie Synakewicz, Rohan S. Eapen, Albert Perez-Riba, Daniela Bauer, Andreas Weißl, Gerhard Fischer, Marko Hyvönen, Matthias Rief, Laura S. Itzhaki, Johannes Stigler
bioRxiv 2021.03.27.437344; doi: https://doi.org/10.1101/2021.03.27.437344
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Consensus tetratricopeptide repeat proteins are complex superhelical nanosprings
Marie Synakewicz, Rohan S. Eapen, Albert Perez-Riba, Daniela Bauer, Andreas Weißl, Gerhard Fischer, Marko Hyvönen, Matthias Rief, Laura S. Itzhaki, Johannes Stigler
bioRxiv 2021.03.27.437344; doi: https://doi.org/10.1101/2021.03.27.437344

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