Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Quantification of durable CRISPR-based gene silencing activity

Muneaki Nakamura, Alexis Ivec, Yuchen Gao, View ORCID ProfileLei S. Qi
doi: https://doi.org/10.1101/2021.03.31.436355
Muneaki Nakamura
1Department of Bioengineering, Stanford, CA 94305, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Alexis Ivec
1Department of Bioengineering, Stanford, CA 94305, United States
2Program in Human Biology, Stanford, CA 94305, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yuchen Gao
1Department of Bioengineering, Stanford, CA 94305, United States
3Cancer Biology Program, Stanford, CA 94305, United States
†Mammoth Biosciences, South San Francisco, CA 94080, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lei S. Qi
1Department of Bioengineering, Stanford, CA 94305, United States
4Department of Chemical and Systems Biology, Stanford, CA 94305, United States
5ChEM-H Institute, Stanford, CA 94305, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Lei S. Qi
  • For correspondence: stanley.qi@stanford.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Development of CRISPR-based technologies for regulating gene expression stands to provide novel methods for the study and engineering of biological behavior. New tools capable of inducing long-lasting changes in gene expression will increase the utility of these techniques, providing durable effects from one-time doses of reagents. We describe here a reporter system for quantifying the ability of CRISPR-based effectors to induce stable gene repression. We observe a continuous gradation of the ability of these effectors to silence gene expression, depending on the domain composition and configuration. We also report the creation of a single CRISPR protein capable of producing durable gene silencing. This assay should allow for the continued development of enhanced gene repression tools which will be useful in a wide array of biological research and engineering applications.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted March 31, 2021.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Quantification of durable CRISPR-based gene silencing activity
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Quantification of durable CRISPR-based gene silencing activity
Muneaki Nakamura, Alexis Ivec, Yuchen Gao, Lei S. Qi
bioRxiv 2021.03.31.436355; doi: https://doi.org/10.1101/2021.03.31.436355
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
Quantification of durable CRISPR-based gene silencing activity
Muneaki Nakamura, Alexis Ivec, Yuchen Gao, Lei S. Qi
bioRxiv 2021.03.31.436355; doi: https://doi.org/10.1101/2021.03.31.436355

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Synthetic Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (2646)
  • Biochemistry (5265)
  • Bioengineering (3678)
  • Bioinformatics (15796)
  • Biophysics (7253)
  • Cancer Biology (5627)
  • Cell Biology (8095)
  • Clinical Trials (138)
  • Developmental Biology (4765)
  • Ecology (7516)
  • Epidemiology (2059)
  • Evolutionary Biology (10576)
  • Genetics (7730)
  • Genomics (10130)
  • Immunology (5192)
  • Microbiology (13904)
  • Molecular Biology (5384)
  • Neuroscience (30779)
  • Paleontology (215)
  • Pathology (879)
  • Pharmacology and Toxicology (1524)
  • Physiology (2254)
  • Plant Biology (5022)
  • Scientific Communication and Education (1041)
  • Synthetic Biology (1385)
  • Systems Biology (4146)
  • Zoology (812)